PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_018782-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 216aa MW: 25296.8 Da PI: 8.26 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 21 | 44 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y C+ Cg + s ks+L++H+ + H AHYPO_018782-RA 21 YYCEFCGICRSKKSLLNSHLISdH 44 89******************9888 PP | |||||||
2 | zf-C2H2 | 22.4 | 3.2e-07 | 67 | 88 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg +F+ + +Lk+H+ +H AHYPO_018782-RA 67 TCEECGVTFKKPAHLKQHMLSH 88 7*******************99 PP | |||||||
3 | zf-C2H2 | 21.2 | 7.8e-07 | 94 | 118 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++Cp dC+ s++rk++L rH+ H AHYPO_018782-RA 94 FSCPvnDCNASYRRKDHLSRHMLQH 118 89********************988 PP | |||||||
4 | zf-C2H2 | 13.8 | 0.00017 | 123 | 148 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 +kCp +C+k Fs + n rH r H AHYPO_018782-RA 123 FKCPieNCNKEFSVHGNISRHVRDfH 148 89*******************99766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.538 | 21 | 49 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 16 | 21 | 44 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 13.11 | 66 | 93 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0067 | 66 | 88 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.4E-5 | 67 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 68 | 88 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.96E-11 | 79 | 120 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.1E-14 | 85 | 120 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 4.7E-4 | 94 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.055 | 94 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 96 | 118 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 9.16E-6 | 121 | 149 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 4.7E-6 | 121 | 146 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.012 | 123 | 148 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.011 | 123 | 153 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 125 | 148 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MGEEPKGREE IGPIFRDIRR YYCEFCGICR SKKSLLNSHL ISDHKEEMEK KRELEGEEGE 60 GQMSCNTCEE CGVTFKKPAH LKQHMLSHSF ERPFSCPVND CNASYRRKDH LSRHMLQHEG 120 KLFKCPIENC NKEFSVHGNI SRHVRDFHKD KPESDGKKGQ DKHVCQEIGC GKEFRYASHF 180 EIFRNILCRS QVYDVFFQYQ VPQGTYQKIS PIRKM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2i13_A | 4e-12 | 67 | 186 | 23 | 127 | Aart |
2i13_B | 4e-12 | 67 | 186 | 23 | 127 | Aart |
2yt9_A | 8e-13 | 59 | 148 | 1 | 89 | zinc finger-containing protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021749253.1 | 2e-92 | transcription factor IIIA-like | ||||
Swissprot | Q84MZ4 | 3e-51 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | A0A0K9R4E8 | 5e-76 | A0A0K9R4E8_SPIOL; Uncharacterized protein | ||||
STRING | XP_010673198.1 | 1e-78 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 4e-49 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_018782-RA |