PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AHYPO_018504-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 195aa MW: 21809.8 Da PI: 9.6944 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.9 | 3.6e-20 | 17 | 64 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i++ rqvtfskRr g++KKA+E+++LC++++ +i+fs+ ++++ + AHYPO_018504-RA 17 KINDPNHRQVTFSKRRLGVFKKASEICTLCGVQAIIIVFSPGNRIFSF 64 6888999**********************************9999877 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.2E-28 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 23.1 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.06E-26 | 9 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.69E-31 | 9 | 77 | No hit | No description |
PRINTS | PR00404 | 3.7E-16 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-21 | 17 | 64 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-16 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-16 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 195 aa Download sequence Send to blast |
MATKKPPRGR QKIEIAKIND PNHRQVTFSK RRLGVFKKAS EICTLCGVQA IIIVFSPGNR 60 IFSFGHPNVK SIIDRYLCRN PSSCPPQTSS SNNDNNKNVD VGQNTTLNTL NLQITNTLDL 120 LANEKNKGEA FKNLLRESSQ WWWEAPIDNL GLHELEVLGV SLEELKKSIT SQVIFLENQR 180 SNMANNAADH EARV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1n6j_A | 3e-16 | 9 | 94 | 1 | 82 | Myocyte-specific enhancer factor 2B |
1n6j_B | 3e-16 | 9 | 94 | 1 | 82 | Myocyte-specific enhancer factor 2B |
1tqe_P | 2e-16 | 9 | 94 | 2 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-16 | 9 | 94 | 2 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-16 | 9 | 94 | 2 | 83 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-16 | 9 | 94 | 2 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-16 | 9 | 94 | 2 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-16 | 9 | 94 | 2 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-16 | 9 | 94 | 2 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-16 | 9 | 94 | 2 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-16 | 9 | 94 | 2 | 83 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-16 | 9 | 94 | 2 | 83 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021754978.1 | 2e-73 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0K9QCA5 | 2e-68 | A0A0K9QCA5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010692431.1 | 2e-66 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 7e-33 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AHYPO_018504-RA |