PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_018442-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 221aa MW: 23556.7 Da PI: 7.8193 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 55 | 77 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk Fs+ L H +H AHYPO_018442-RA 55 FSCKTCGKKFSSFQALGGHRASH 77 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.57E-10 | 53 | 123 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.1E-4 | 53 | 82 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 5.4E-10 | 55 | 79 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.175 | 55 | 82 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.096 | 55 | 77 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 57 | 77 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.6E-10 | 100 | 125 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.307 | 101 | 128 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.38 | 101 | 123 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 103 | 123 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MNTQTATIAK FPAIRGAAGE IETFAMANCL MLLSSQQNSA INSTAMADNE VGRMFSCKTC 60 GKKFSSFQAL GGHRASHKKI KPANSGEVSG ELNIPTKPKV HACSICGAEF PIGQALGGHM 120 RRHRGLLSGG DGGSAVVSDV TSDGSFQNSE GSHIVDNKKR KSNDVVVEVP ILKKATSCKR 180 VCLDLSLSLW NKEEEHGDHS EVEKGIIVDQ DEEDFLKLKL * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021720925.1 | 3e-74 | zinc finger protein ZAT8-like | ||||
TrEMBL | A0A0K9QZC0 | 3e-53 | A0A0K9QZC0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010685828.1 | 5e-73 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 1e-29 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_018442-RA |