PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_018273-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ARF
Protein Properties Length: 362aa    MW: 42001.9 Da    PI: 5.878
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_018273-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.49e-121652293298
                      --SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  32 esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +    +l d +g+ We+ +     +    +t GW +F++ ++LkegD++vF+l++ s+ +++v+++ 
  AHYPO_018273-RA 165 GREIFQLIDIHGKIWEIMVLL-IEGMFDRFTYGWHDFAETKNLKEGDSIVFMLKK-STNKCHVGIRT 229
                      3346899************54.3333346899********************987.88889***986 PP
2Auxin_resp28.47.2e-11244333183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafe...tedsserrl.sGtvvgv...sdldpvrWpnSkWrsLk 83 
                      a++++++k+ FevvY+P  + +eFvv+ ekv +a +v+++    + + +e   +   + + +  G + +    ++ d + Wp+  Wr+L+
  AHYPO_018273-RA 244 AIEKVENKKSFEVVYYPIWGLPEFVVPKEKVDNASHVSWTREKMVMIPYEflaGGHEPIKCWlHGKILDYvnrENDDMSDWPDCWWRVLE 333
                      578899*******************************99988777777773332334444457999987622234467899999999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-13128230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-13132230IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.1E-5133231IPR003340B3 DNA binding domain
CDDcd100171.81E-11133228No hitNo description
PfamPF023621.3E-8163230IPR003340B3 DNA binding domain
PROSITE profilePS5086311.18171231IPR003340B3 DNA binding domain
PfamPF065078.4E-9244332IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MASPSNHEQE VDQDQDYKSY TEREVDQELW EACAGVHIHI PKLDSLVYYF PRDHIEHSSS  60
SPNEYILLSR HYGSRLCRVT NVSFHADSQT DQVFVKFLLQ PCKTDGPKKP APIPSPSPNP  120
IRRNRINDNI VTYVKVLSKS DIQEGLLVTK ALHDCIFSKL PQNPGREIFQ LIDIHGKIWE  180
IMVLLIEGMF DRFTYGWHDF AETKNLKEGD SIVFMLKKST NKCHVGIRTA NINRSISIKD  240
VTDAIEKVEN KKSFEVVYYP IWGLPEFVVP KEKVDNASHV SWTREKMVMI PYEFLAGGHE  300
PIKCWLHGKI LDYVNRENDD MSDWPDCWWR VLEIIWYVSP EIILEKMPNL LNDSSPWELQ  360
D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-20333629370Auxin response factor 5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.12e-33auxin response factor 17