PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017754-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family G2-like
Protein Properties Length: 452aa    MW: 50332.5 Da    PI: 6.558
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017754-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like87.31.5e-27218271256
          G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                       +++Wtp+LH+rFv+ave+L G ++A+P++ilelmkv+gLt+++++SHLQkYR++
  AHYPO_017754-RA 218 IKVDWTPDLHKRFVQAVEKL-GVDQAIPSRILELMKVDGLTRHNIASHLQKYRMH 271
                      5899****************.********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011010.907140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129416.13214273IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-26215274IPR009057Homeodomain-like
SuperFamilySSF466897.44E-18216274IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-25217271IPR006447Myb domain, plants
PfamPF002491.7E-8220269IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MISKEHCLNT MMKCIALGAV EFLVEPLSED KLRNIWQHVV HKVFNMSGSG KSESLKSVKD  60
FVDSILDIQQ ESVAIQTHIS EEQIVNTEVD VGDHNPSAAG DKFAAPSTPQ IKQSGRSLDD  120
GDYQDQTNNS SVKEGEEFDG ETKSVDNTLV GNSFAKIDED PPLPTSSGAI KEEVEDRSDS  180
IPMPCDKKEA TNVGPNSGRS IKESSHNVCG TKSSRKKIKV DWTPDLHKRF VQAVEKLGVD  240
QAIPSRILEL MKVDGLTRHN IASHLQKYRM HRRHILPKQE ERRWPHPRDS TPRNYYSHHR  300
PVMVYPPNQN NHAFASGQVY PMWGQQGFQP PGFPVWGSPS YPWQPTENWP WKPYPPMHAD  360
AWGCPVMPAS VCPTSTFQVQ GAYGFHSPDS YGKNSADINP GEEVIDKVVK EAINKPWLPL  420
PIGLKSPSTD SVLAELSRQG ISTIPPNIYQ C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-16222271655Transcription factor LUX
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019105078.10.0PREDICTED: two-component response regulator-like APRR2 isoform X1
TrEMBLA0A0K9RR190.0A0A0K9RR19_SPIOL; Uncharacterized protein
TrEMBLA0A0K9RSM00.0A0A0K9RSM0_SPIOL; Uncharacterized protein
STRINGXP_010677297.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.64e-96ARR-B family protein