PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017728-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family FAR1
Protein Properties Length: 501aa    MW: 55897.9 Da    PI: 9.4303
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017728-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.61.3e-1564136289
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                      fY+eYA+++GF++++ ++ + ++    ++r+fvC+k+g+++++++               C+a+++++++  +kw+v+k++++HnH l
  AHYPO_017728-RA  64 FYEEYARQTGFNTKVGQTGRFRHGSGAISRQFVCTKQGSKRKSNDV--------------CEAMMRIELK-GNKWVVIKFVKKHNHVL 136
                      9**************************************9997766..............**********.9**************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.7E-1264136IPR004330FAR1 DNA binding domain
PfamPF044342.4E-10181215IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.276181217IPR007527Zinc finger, SWIM-type
SMARTSM005751.6E-7192219IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MGIGIIDVAD GNMRIRASTE NGETGMSEGG ERNPNDDYAV QDEVTVLEPH VGMEFELESA  60
AKAFYEEYAR QTGFNTKVGQ TGRFRHGSGA ISRQFVCTKQ GSKRKSNDVC EAMMRIELKG  120
NKWVVIKFVK KHNHVLGSLN KVHSIRPHRH FAGAMTDVPK AYRASVVVPN GVMYGNDYKE  180
YTVTLNISDI RANCSCLMFE YSGILCRHIL TVFTVTNVLT LPSHYILRRW TQNAKRVVAL  240
DEPSADHAQE SIPSRYNVLC RKAIRYAIEG ATSSETYITA ITGLIEGGKK IATVKKNVAK  300
IAPQTPQLSA SRCGDKKNSA ADTPLFWPRQ DEVARRFNLN GSSILPHLVS DMNLVRMEPT  360
YLKRDDVPFD NMVVLPCLKS MTWVMENKNS TPANRLAVIN LKLQDYSKSP AVESEVKFQL  420
SRVTLEPMIR SMANISEQLS TPANRVALQD TETISGESEV KFQVSRDTLG AMLRSMAYIR  480
EQLSVVMDPS TEQSSKKQRK *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859486.10.0protein FAR1-RELATED SEQUENCE 3-like isoform X2
SwissprotQ9ZVC91e-134FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A0B0N5C20.0A0A0B0N5C2_GOSAR; Far1-related sequence 3-like protein
STRINGXP_002521644.10.0(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.21e-126FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]