PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017534-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 310aa    MW: 35142 Da    PI: 6.1978
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017534-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.32.3e-12188213126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y   +C+++ +tG+C yGd+CkF+H+
  AHYPO_017534-RA 188 YQPDICKDYKETGYCGYGDSCKFMHD 213
                      67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.83E-9186218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878187215IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7187214IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-12188218IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10188213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.107.6E-10248293IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.58E-9264297No hitNo description
PROSITE profilePS500898.683265304IPR001841Zinc finger, RING-type
CDDcd001628.41E-6265297No hitNo description
PfamPF000972.5E-4265294IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180280289IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAEASEQDKA EQVCSFFRKP MKNKNIRKRA VDENEDEDDD VKTESSVLTS AKRPVKADNK  60
LFFTTGPSKH SASDESSKDS KNILFKYESS KEIQVQNDSK ATATLETETD IFRDARAIRE  120
RALKKAEEAL KGKNKPSGDE KVYKGINNYT DHRAGFRREQ TVAAEKAGGA HGPLRASAHI  180
RVSARFDYQP DICKDYKETG YCGYGDSCKF MHDRGDYKSG WQMEKEWEEA EKTRKRNLAL  240
GGHDSDEENA EHDEEDEDDS LPFACFICRQ PFVDPVVTKC KHYFCEHCAL KVIYNIHYIS  300
FNICIAIGA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-5812911288RING finger protein 113A
5z58_M4e-5812911288RING finger protein 113A
6ff4_t4e-5812911288RING finger protein 113A
6ff7_t4e-5812911288RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667731.11e-167PREDICTED: zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-144C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A0J8B5U21e-166A0A0J8B5U2_BETVU; Uncharacterized protein
STRINGXP_010667731.11e-166(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-127C3H family protein