PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_017325-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | B3 | ||||||||
Protein Properties | Length: 255aa MW: 29442.2 Da PI: 9.8278 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 61.3 | 1.6e-19 | 24 | 113 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 ffk+ +p +++k +lv+p f+++++gk + +++l++++g+ W+++l + ++ +++kGW +Fv +n L+ g+f++F+++g++ f v AHYPO_017325-RA 24 FFKIYLPDYNSK--QLVIPPAFINNFNGK--IPSKVVLKSLQGKDWNIEL--EHDERKLLMKKGWDRFVIDNSLELGEFLIFSYSGNTVF--IV 109 778885555554..59*******888777..5668***************..999999***************************99999..99 PP EEE- CS B3 95 kvfr 98 k+f+ AHYPO_017325-RA 110 KIFS 113 9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.0E-24 | 19 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.0E-23 | 19 | 117 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.762 | 22 | 115 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 5.58E-18 | 22 | 113 | No hit | No description |
SMART | SM01019 | 9.6E-19 | 24 | 115 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.8E-17 | 24 | 113 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 7.119 | 152 | 252 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-6 | 162 | 236 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.69E-7 | 162 | 235 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MVRVMKRRRE TPSKECTTRH PPEFFKIYLP DYNSKQLVIP PAFINNFNGK IPSKVVLKSL 60 QGKDWNIELE HDERKLLMKK GWDRFVIDNS LELGEFLIFS YSGNTVFIVK IFSINGCLKE 120 EKTNTVLHEP IEVSDDSSEA MPEVVQERTV QSKNIRLSKF VDARGYMHIP AAIFRENNIK 180 LPRPKKDILL RYTKGVSQVA QIVQTTRKRV RVSSGWKDFH SKCKIVEGDK CEFDVVVGDD 240 RQIKEIVLLQ ICSN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021838094.1 | 2e-79 | putative B3 domain-containing protein Os03g0621600 | ||||
Refseq | XP_021847162.1 | 2e-79 | putative B3 domain-containing protein Os03g0621600 | ||||
TrEMBL | A0A0K9S0M5 | 6e-77 | A0A0K9S0M5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010674817.1 | 3e-44 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66980.1 | 3e-22 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_017325-RA |