PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017318-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family FAR1
Protein Properties Length: 569aa    MW: 66387.8 Da    PI: 6.9217
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017318-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.22.4e-2268159190
             FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                      ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++++++k++++++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHel 
  AHYPO_017318-RA  68 DYYGSFARKNGFSIRKERSRISPQLG-IYKRDFVCYRSGFASSRRKASSEHQRDRKSVRCGCDAKMFLSKEVvdgVSQWFVVQFSNVHNHELL 159
                      59********************8888.*******************************************99867789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-2068159IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.225453488IPR007527Zinc finger, SWIM-type
PfamPF044345.3E-9454488IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-6463490IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MSGRNNLWLR KQNCPCGDWK CYITYDAQTD ETSFTSQVSI KNETNQLFED MIDPYVGMGF  60
KTDVDAFDYY GSFARKNGFS IRKERSRISP QLGIYKRDFV CYRSGFASSR RKASSEHQRD  120
RKSVRCGCDA KMFLSKEVVD GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIQEPDQER  180
ILLLSKAGFP VHRIVKVLEL EKGINGGQLP FLERDVRNFV QNRKRMAQES DALLSEKRDS  240
EILELLEAYT GLQESIRSEL PSTKHIISVW YILPKLSGWF SLLLGSSFAD FRSEFDVLYR  300
MESTEQFEFE WTQMVARFEL ESEKHSSLLF SLRESWALSY VRGYLLAQMA TLAYSKCVDM  360
FLKGIVNKQP CLCSFFERIS HARSIQRQAY PDMRGIQTRT CVPIEEHARN ILTPFAFGVF  420
KQELMLAMQY AVSEMANGSC LVQHFKKMDG ERFVIWIPEG EQIHCSCKEF ESSGILCRHA  480
LRVFIAKNYF ELPEVYFSRR WQKIQYDDQP VQISKDEWFQ EFHDLTSTLF TESLVTKERF  540
DLVQKELSKE LLRLINEVRS MPANDEVG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027368884.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X4
SwissprotQ9LKR41e-109FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A0B0Q0U70.0A0A0B0Q0U7_GOSAR; Far1-related sequence 10-like protein
STRINGEOY289581e-138(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.11e-112FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]