PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_017287-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

C2H2

Protein Properties

Length: 391aa MW: 43742.2 Da PI: 9.8062

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_017287-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.2	3.3e-06	146	169	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++Cp Cg++F +s+L++H+ H AHYPO_017287-RA 146 FPCPTCGEVFLKQSLLETHQTIkH 169 89******************8877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.18	146	174	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	148	169	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	5.28E-18	171	219	No hit	No description
Gene3D	G3DSA:3.90.228.10	7.7E-4	188	296	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
SuperFamily	SSF56399	5.28E-18	247	389	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.0E-4	326	389	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MAKTLTSHLN KLFFSLLLLL LHVGCFIFSS SYYNKNNYDL NLPTKKRKSS NNLSPKKAFS 60 SSWSFIKRVF SPSYKRTTTQ TRPPTPTNTA TTTSFSSPRS SQHSIVVPIR ESELRTPPRK 120 RRTGSRSEFD SSLYENPFFP LRNDIFPCPT CGEVFLKQSL LETHQTIKHA VSELRDGDSG 180 KNIVWIIFNT GWNNIKVDKP INIHRILKIH HSQKMLAKFE EFREGVKSKA ARAVSRAVDT 240 AAIRRDERCI ADGNELLRFH CTTFLCNLGQ NGNSALCNQV YCSACGIIRA GFSPKLDGIS 300 TFATSSRAHD AIPDDVEAEF AFMNVKRAML VCRVIAGRVG CDVMVVDKED PGFDSLVGRN 360 VAGPGRMDDE ELLVFNPRAV LPCFVIVYSV *

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MAKTLTSHLN KLFFSLLLLL LHVGCFIFSS SYYNKNNYDL NLPTKKRKSS NNLSPKKAFS  60
SSWSFIKRVF SPSYKRTTTQ TRPPTPTNTA TTTSFSSPRS SQHSIVVPIR ESELRTPPRK  120
RRTGSRSEFD SSLYENPFFP LRNDIFPCPT CGEVFLKQSL LETHQTIKHA VSELRDGDSG  180
KNIVWIIFNT GWNNIKVDKP INIHRILKIH HSQKMLAKFE EFREGVKSKA ARAVSRAVDT  240
AAIRRDERCI ADGNELLRFH CTTFLCNLGQ NGNSALCNQV YCSACGIIRA GFSPKLDGIS  300
TFATSSRAHD AIPDDVEAEF AFMNVKRAML VCRVIAGRVG CDVMVVDKED PGFDSLVGRN  360
VAGPGRMDDE ELLVFNPRAV LPCFVIVYSV *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021720713.1	0.0	uncharacterized protein LOC110688290
TrEMBL	A0A0K9RQ76	1e-180	A0A0K9RQ76_SPIOL; Uncharacterized protein
STRING	XP_010685594.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29660.1	1e-100	C2H2 family protein

Link Out ? help Back to Top
Phytozome	AHYPO_017287-RA