PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_017136-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 69aa MW: 7686.92 Da PI: 10.5916 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94.1 | 6.5e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 kri+++snrqvtfskRrng+lKKA ELS+LCda+v v++fsstgkly+++s AHYPO_017136-RA 9 KRIDDSSNRQVTFSKRRNGLLKKARELSILCDADVGVVVFSSTGKLYDFAS 59 79***********************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.497 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.6E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.67E-29 | 2 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.67E-37 | 2 | 60 | No hit | No description |
PRINTS | PR00404 | 2.4E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
MGRGKIVIKR IDDSSNRQVT FSKRRNGLLK KARELSILCD ADVGVVVFSS TGKLYDFASS 60 KYVFYTLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-20 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 1e-20 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 1e-20 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 1e-20 | 1 | 60 | 1 | 60 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Transcriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022768505.1 | 3e-31 | agamous-like MADS-box protein AGL21 | ||||
Refseq | XP_022768506.1 | 3e-31 | agamous-like MADS-box protein AGL21 | ||||
Refseq | XP_028783668.1 | 3e-31 | agamous-like MADS-box protein AGL21 | ||||
Refseq | XP_028785048.1 | 3e-31 | agamous-like MADS-box protein AGL21 | ||||
Swissprot | Q6Z6W2 | 2e-29 | MAD57_ORYSJ; MADS-box transcription factor 57 | ||||
Swissprot | Q9SZJ6 | 2e-29 | AGL21_ARATH; Agamous-like MADS-box protein AGL21 | ||||
TrEMBL | A0A0L9UYB2 | 3e-31 | A0A0L9UYB2_PHAAN; Uncharacterized protein | ||||
TrEMBL | A0A251RHN1 | 2e-31 | A0A251RHN1_PRUPE; Uncharacterized protein | ||||
TrEMBL | A0A427AGR1 | 3e-31 | A0A427AGR1_ENSVE; Uncharacterized protein | ||||
STRING | Bo1g003270.1 | 6e-32 | (Brassica oleracea) | ||||
STRING | Bo3g153080.1 | 5e-32 | (Brassica oleracea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 7e-32 | AGAMOUS-like 21 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_017136-RA |