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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | AHYPO_017053-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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| Family | Nin-like | ||||||||
| Protein Properties | Length: 263aa MW: 28603 Da PI: 9.1773 | ||||||||
| Description | Nin-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | RWP-RK | 56.8 | 4.2e-18 | 13 | 58 | 3 | 48 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRk 48
+++s+ed+sk Fslp+ +AA Lgv++ +LK+iC ++G++RWPhRk
AHYPO_017053-RA 13 NSLSFEDVSKLFSLPLSEAAGILGVSTNALKKICNENGLERWPHRK 58
689******************************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS51519 | 14.652 | 1 | 81 | IPR003035 | RWP-RK domain |
| Pfam | PF02042 | 8.3E-17 | 15 | 59 | IPR003035 | RWP-RK domain |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 263 aa Download sequence Send to blast |
MNSIQNQKSN IDNSLSFEDV SKLFSLPLSE AAGILGVSTN ALKKICNENG LERWPHRKFL 60 AGKTIDEIKK EAAIAKSKAL GGTSPSRSNV ATLTSGLGVK ENSWKSTSGV WSQGSTQQQG 120 SKSTSRDHPI VASGLVSKTN LFSDEFKYGF PSSGLSECTY RWWESSFIGS EVSNDDSNTS 180 SEVRNTSKVQ AEDGFSCSRE ENDSMVVDSG SEKSDEVLLS ATRKRAVEEG KKGLKLRVLK 240 KYGADKLGND EKILLRRLCR MI* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010673598.1 | 1e-92 | PREDICTED: protein NLP9 | ||||
| TrEMBL | A0A0K9S245 | 8e-83 | A0A0K9S245_SPIOL; Uncharacterized protein | ||||
| STRING | XP_010673598.1 | 5e-92 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G74480.1 | 9e-10 | RWP-RK domain-containing protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | AHYPO_017053-RA |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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