PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_017032-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 658aa    MW: 72023.8 Da    PI: 6.3993
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_017032-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.35.4e-08279299526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd+C +aHg
  AHYPO_017032-RA 279 PCPEFRK-GACPKGDSCEYAHG 299
                      8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.31E-1530154IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.0E-1632178IPR020683Ankyrin repeat-containing domain
PfamPF127963.1E-973146IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01477107IPR002110Ankyrin repeat
PROSITE profilePS5029716.41477152IPR020683Ankyrin repeat-containing domain
CDDcd002046.31E-1479152No hitNo description
SMARTSM002480.0076112144IPR002110Ankyrin repeat
PROSITE profilePS5008812.129112147IPR002110Ankyrin repeat
SMARTSM003561.5E-5274300IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4278301IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-5279299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.619279301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.1E-4307337IPR000571Zinc finger, CCCH-type
SMARTSM0035672309332IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MCSGSKKKVF TGEEVMEGEM SMKDSGVDLQ NSSLLLELSA TNDVSSFKHA IEKDGYDIDG  60
VGFWYGRRIG SKKMGYEERT PLMVASMFGS KEILCYILQT GCVDVNRASG SDGATALHCA  120
ASGGSMYTHE VIKLLVESSA DVNRVDVDGN RPCDVITPSL SFSSKLKRTL EILLNKDDHQ  180
GEEARNQIEE EQQLVQQEGL SPKASSDGSG SERKEYPIDP SLPDIKNGIY GTDEFRMYTF  240
KVKPCSRAYS HDWTECPFVH PGENARRRDP RKYHYSCVPC PEFRKGACPK GDSCEYAHGI  300
FECWLHPAQY RTRLCKDETK CARRVCFFAH KVEELRPLYA STGSAVPSPR SYSSGGLSFD  360
MASLSPLALG SPSVMMPSTS TPPMTPTGAS SPIGGAAAWQ NHLNITPPPA LQLPGSRLKA  420
ALSARDMDME TELRRHQLLD KLTSLSLSSP SNWNGELGRL GGMPLSSPTS VQMRQNMNQQ  480
QFLSNYSSAL PSSPVRGSTF GLEPSSSPVS NPRLAAFAKR SQSFIDRNAV NQLSGGLSSP  540
ASNTSMMPSH LSDWGSPDGK VDWGVQGDEL NKLRKSASFA YRSSSSSSNS SSLRNSNTDE  600
PDVSWVHSLV KEAPPGKSAQ LGIDEQLKEQ YYLNGDMMER MPPWVEQFYM EQEPMAA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021715545.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0K9QQB90.0A0A0K9QQB9_SPIOL; Uncharacterized protein
STRINGXP_010685536.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein