PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016977-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 680aa    MW: 74619.8 Da    PI: 6.8216
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016977-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.78.4e-08303323526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C+ f++ G C+ Gd C +aHg
  AHYPO_016977-RA 303 PCPEFRK-GACPKGDACEYAHG 323
                      8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.02E-1557182IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.1E-1658212IPR020683Ankyrin repeat-containing domain
PfamPF127963.1E-1099175IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0086106136IPR002110Ankyrin repeat
PROSITE profilePS5029717.21106176IPR020683Ankyrin repeat-containing domain
CDDcd002041.93E-13108179No hitNo description
PROSITE profilePS5008811.995141176IPR002110Ankyrin repeat
SMARTSM002480.0019141173IPR002110Ankyrin repeat
SMARTSM003562.3E-5298324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4302325IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-5303323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.319303325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-4331361IPR000571Zinc finger, CCCH-type
SMARTSM0035638333356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MSLSNFNSGF SLRRWADIKG REINRSRKVL FFSMCSGSKR QVFTAEGIME GKDSDLDHQK  60
SSLLLELSAT NDINSFKQAV EEEGYDVDDA GLWYGRRVGS KKMGFEERTP LMVAAIFGSK  120
DILIYILQTG RVDVNRASRS DGATALHCAA SGGSMYSHEM IKLLVESSAD VNQVDLNGNQ  180
ACDVIAPGFS FSLKLKRKTL DILLNKGDQD EDQTDEGQLQ QEGFSPKASS DGSGSERKEY  240
PVGPSLPDIK NGIYGTDEFR MYTFKVKPCS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS  300
CVPCPEFRKG ACPKGDACEY AHGIFECWLH PAQYRTRLCK DETNCARRVC FFAHKVEELR  360
PLYASTGSAV PSPRSYSSSG PSFDMASLSP LALGSPSVLM PSTSTPPMTP TGGSSPIGGA  420
ASWQNHLNLT PPPALQLPGS RLKAALSARD MDFETELRRQ QLLDELAGLS LSSPSNWNGE  480
LGRLGGLPLS SPTGVQMRQN INQLQLLSSY SSGLPSSPVR GSSFGLEPSS SPVSNPRLCA  540
FAKRSQSFID RNTVNRLSGG LSSPTSNTSM MPSHISNWGS PDGKLDWGVQ GDEIHKLRKS  600
ASVVYRTNSS NSTSMRTPTT DEPDVSWVHS LVKEAPSAKS AQLDFDEQLK EQYYLNSGML  660
ETMPPWVEQM YMEQEPMVA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021715545.10.0zinc finger CCCH domain-containing protein 66-like
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A0K9QQB90.0A0A0K9QQB9_SPIOL; Uncharacterized protein
STRINGXP_010685536.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein