PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_016924-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | ERF | ||||||||
Protein Properties | Length: 230aa MW: 24902.3 Da PI: 4.5012 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.6e-18 | 39 | 89 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a++ ++g AHYPO_016924-RA 39 PVYRGVRKRA-WGKWVSEIREPRK---KSRIWLGTFSTPEMAARAHDVAALTIKG 89 68*****887.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.8E-13 | 39 | 89 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 40 | 98 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.1E-36 | 40 | 103 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.9E-32 | 40 | 98 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.578 | 40 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.6E-10 | 41 | 52 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.14E-34 | 41 | 99 | No hit | No description |
PRINTS | PR00367 | 1.6E-10 | 63 | 79 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MASGANHITS ENSDNSPTSS VTTDDQTQTR QKQKDTKHPV YRGVRKRAWG KWVSEIREPR 60 KKSRIWLGTF STPEMAARAH DVAALTIKGT SAVLNFPDLA SSLPRPLSNS PRDVQLAAAK 120 AAALEFDVSP AGGATVEEEK NTPCVSAFSL SSTSSSSSSS STALSPESSA VSSSPMTEND 180 EEQLLGEIVE LPSLEDVTGF DSGEFVDKTW LMYEYYNDSE SDPFLQWWV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-19 | 38 | 97 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcriptional activator. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010688291.1 | 3e-83 | PREDICTED: ethylene-responsive transcription factor ERF043 | ||||
Swissprot | Q39127 | 2e-50 | TINY_ARATH; Ethylene-responsive transcription factor TINY | ||||
TrEMBL | A0A0K9R3G0 | 2e-75 | A0A0K9R3G0_SPIOL; Uncharacterized protein (Fragment) | ||||
STRING | XP_010688291.1 | 1e-82 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25810.1 | 9e-38 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_016924-RA |
Publications ? help Back to Top | |||
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