PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016731-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 314aa    MW: 35252 Da    PI: 8.1545
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016731-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA63.82e-20229262134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      Cs+C++tkTp+WR gp+g+ktLCnaCG+++++ +
  AHYPO_016731-RA 229 CSHCQVTKTPQWRAGPNGPKTLCNACGVRFKSGR 262
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.8E-734313IPR016679Transcription factor, GATA, plant
SuperFamilySSF577164.47E-14222285No hitNo description
SMARTSM004018.4E-16223273IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.2E-15227260IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.833227259IPR000679Zinc finger, GATA-type
CDDcd002027.50E-16228285No hitNo description
PfamPF003203.8E-18229262IPR000679Zinc finger, GATA-type
PROSITE patternPS003440229254IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MECMKRRALK SRFSSELAMN STNPQNIIDD LGCVNGLSSE EFSIDEFFDL PNEDKIDGFE  60
EEEEEKDSTN SVSFQHHFDV FNSNSTTFPP DLFPVDDMQD LEIWSHLMDD SIQEPTLACP  120
NPILDGHKRK TGYTSEPVYK PVSVRVPILS KPVPVKPRSK RLRTGKFTWS SVLSEKNDLL  180
SSPVSTLLFS PPVYNVGIIY GFGKPIKKRK KKPGLVSSAR ENSPVQRRCS HCQVTKTPQW  240
RAGPNGPKTL CNACGVRFKS GRLFPEYRPA CSPTFSCEIH SNSHRKVLEM RKKKEGIEHE  300
NGSSLTVEPV LSS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206210KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021753502.11e-123GATA transcription factor 5-like
TrEMBLA0A0K9QTQ31e-121A0A0K9QTQ3_SPIOL; GATA transcription factor
STRINGXP_010690771.11e-100(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36240.11e-47GATA transcription factor 7