PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_016513-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 439aa    MW: 50927.2 Da    PI: 10.091
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_016513-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-1564151297
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      +kv+++s+v+    + lp +f++++   +++++ ++le++ g++++ k+     s++ +l++GW +F+k+ +Lk+gD+ vF+l++ ++f  +++
  AHYPO_016513-RA  64 VKVMVQSNVSGGFSMPLPTTFCRQYL--PAKDTIMILETQAGERYKAKF----LSRSLILSGGWIRFAKDMNLKVGDIAVFHLVSATKF--KIH 149
                      699**********************5..4567789**************....56679************************9988888..666 PP

                      EE CS
               B3  96 vf 97 
                      ++
  AHYPO_016513-RA 150 FI 151
                      55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1859153IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.4E-1760153IPR015300DNA-binding pseudobarrel domain
CDDcd100171.50E-1861152No hitNo description
SMARTSM010193.8E-1263154IPR003340B3 DNA binding domain
PROSITE profilePS5086312.05563154IPR003340B3 DNA binding domain
PfamPF023622.8E-1464152IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MQDQRKEVKI TERFKNLFCG NPKKFMAYKI RRKYLRLSQI LKKCKLDQVK EIESKNIFEY  60
PTTVKVMVQS NVSGGFSMPL PTTFCRQYLP AKDTIMILET QAGERYKAKF LSRSLILSGG  120
WIRFAKDMNL KVGDIAVFHL VSATKFKIHF IREDSASKRS LKQTVLSKTD NTQVIVYMRR  180
EHQTAGHYNM CSARLNFMNP KDSMFSIDDM LFSEITSFQD FKSALHKLLQ NQKLPYNILQ  240
DYYELCNSQN AFLHANLFKG IYPKFNNQII IEAIRRIISD SVIIANTLRT CTLSTFLQKH  300
GSWEKMLNTY EALGLNAGFL LARLHRLKNF TLTSEGAVYW NRYYEASHER SRVEIEAQKL  360
KSILSLLQTK TLQLEPLKEK YGGTHSWLVV AKAEIRNLEV SVSELCKFFV QYDAHIETLK  420
LKAEPHEIRF QAEASAPW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019102988.11e-150PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X3
TrEMBLA0A0J8DYM81e-147A0A0J8DYM8_BETVU; Uncharacterized protein
STRINGXP_010666642.11e-91(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-23B3 family protein