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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | AHYPO_015382-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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| Family | ARF | ||||||||
| Protein Properties | Length: 867aa MW: 95433.1 Da PI: 4.9643 | ||||||||
| Description | ARF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 50.3 | 4.2e-16 | 156 | 247 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88
f+k+lt sd++++g +++p++ ae+ ++++ + +l+++d++ ++W++++ + +GW+ Fv +++L++gD v+F +++
AHYPO_015382-RA 156 FCKTLTASDTSTHGGFSVPRRAAEKLfppldyTMQPPFQ-ELVVKDLHDNTWTFRH----------IYRGWSVFVGSKRLRAGDAVLFI--RDE 236
99*********************999****996666664.9***************..........889********************..569 PP
EE..EEEEE-S CS
B3 89 efelvvkvfrk 99
+++l+++v+r+
AHYPO_015382-RA 237 KGHLMIGVRRA 247
999******97 PP
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| 2 | Auxin_resp | 110.9 | 1.3e-36 | 272 | 355 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
aahaa+++++F+v+YnPra+++eFv++++k++ka++ ++vs+GmRf m+fete+s +rr++Gt+v++sdldp+rWp+SkWr+++
AHYPO_015382-RA 272 AAHAAANRTPFTVFYNPRACPTEFVIPASKFRKAIYgTPVSAGMRFGMMFETEESGKRRYMGTIVSISDLDPLRWPGSKWRNIQ 355
79**********************************9********************************************986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 1.96E-39 | 143 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 1.2E-30 | 149 | 260 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.11E-17 | 155 | 246 | No hit | No description |
| SMART | SM01019 | 5.7E-18 | 156 | 248 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.8E-13 | 156 | 247 | IPR003340 | B3 DNA binding domain |
| PROSITE profile | PS50863 | 9.291 | 156 | 248 | IPR003340 | B3 DNA binding domain |
| Pfam | PF06507 | 1.2E-31 | 272 | 355 | IPR010525 | Auxin response factor |
| PROSITE profile | PS51745 | 25.174 | 758 | 842 | IPR000270 | PB1 domain |
| SuperFamily | SSF54277 | 1.11E-9 | 761 | 837 | No hit | No description |
| Pfam | PF02309 | 6.1E-7 | 802 | 844 | IPR033389 | AUX/IAA domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009733 | Biological Process | response to auxin | ||||
| GO:0009908 | Biological Process | flower development | ||||
| GO:0009942 | Biological Process | longitudinal axis specification | ||||
| GO:0010305 | Biological Process | leaf vascular tissue pattern formation | ||||
| GO:0048364 | Biological Process | root development | ||||
| GO:0048507 | Biological Process | meristem development | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016020 | Cellular Component | membrane | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 867 aa Download sequence Send to blast |
MASSVVVVEE KAKPGGVVVG SNVGPPSSTL LEEMKVLKEM QDHSGTRKAL NSELWHACAG 60 PLVSLPQVGS LVYYFPQGHI EQVAISTKRP ATSQIPNYPN LPSQLMCQVH NVTLHADKET 120 DEIFAQMSLQ PVKTEKDVYP IPDFGHKTSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK 180 LFPPLDYTMQ PPFQELVVKD LHDNTWTFRH IYRGWSVFVG SKRLRAGDAV LFIRDEKGHL 240 MIGVRRANRE TTTLPSSVLS ADSMHIGVLA AAAHAAANRT PFTVFYNPRA CPTEFVIPAS 300 KFRKAIYGTP VSAGMRFGMM FETEESGKRR YMGTIVSISD LDPLRWPGSK WRNIQVEWDE 360 PGCGDKQSRV NAWEIETPES LFLFPSLTSG GEFEWGNPIK RPFIQLPADI AAANLSYAAL 420 PNVWSEQLVK ALMRPESMSY PSMLPSSIPL PVQQETKTNV MTGTQQTPHV VSSQCVSVQN 480 YASQHINQQD VGNVSLVEQT NKTNQSTVDA DKTKSEPLCG PSNLNQGASG CHVNEDKETS 540 NPSNPPAQQT IYAEHNNQKL MHPPAMPSVF NSALTDVSPS DLSSLNSLFP YLDAPDWLLC 600 PSTTIPEVID PSLPSLGQDL WDQNQSLKYP TQSDRFGSYS QLSDETNNQS EIYSCIDIDI 660 GNGGNTMVNP SISNDMLNKF CPSKEASLQY SSDCLVGNFS SSQDFQSQIT SASLADSQAF 720 LHNIPDNNSG GTSSSNVDFD ESSLLQNNSW QQVVPPLRTY TKVQKAGSVG RSIDVTSFKD 780 YDELRAAIER MFGLEGLLND PRGSAWKLVY VDFENDVLLV GDDPWEEFVS CVRCIRILSP 840 AEVQQMSEEG MQLLNSNTIP GMSNTT* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 4ldu_A | 0.0 | 1 | 380 | 1 | 392 | Auxin response factor 5 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Mediates embryo axis formation and vascular tissues differentiation. Functionally redundant with ARF7. May be necessary to counteract AMP1 activity. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:14973283, ECO:0000269|PubMed:17553903}. | |||||
| Binding Motif ? help Back to Top | |||
|---|---|---|---|
| Motif ID | Method | Source | Motif file |
| MP00153 | DAP | Transfer from AT1G19850 | Download |
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| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | Retrieve | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_021721139.1 | 0.0 | auxin response factor 5-like | ||||
| Swissprot | P93024 | 0.0 | ARFE_ARATH; Auxin response factor 5 | ||||
| TrEMBL | A0A0K9QSD3 | 0.0 | A0A0K9QSD3_SPIOL; Auxin response factor | ||||
| STRING | XP_010692716.1 | 0.0 | (Beta vulgaris) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G19850.1 | 0.0 | ARF family protein | ||||
| Link Out ? help Back to Top | |
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| Phytozome | AHYPO_015382-RA |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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