PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015172-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 232aa    MW: 25808.8 Da    PI: 4.8195
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015172-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.25e-1956106155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr +  +g+Wv+eIr+p++   r r++lg+f t+e+Aa+a++ a+++++g
  AHYPO_015172-RA  56 PVYRGVRMRA-WGKWVSEIREPRK---RSRIWLGTFETPEMAARAHDVAALCIKG 106
                      68*****998.**********954...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1356106IPR001471AP2/ERF domain
PROSITE profilePS5103223.27557114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-3257115IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2157115IPR016177DNA-binding domain
SMARTSM003804.6E-3757120IPR001471AP2/ERF domain
PRINTSPR003671.5E-105869IPR001471AP2/ERF domain
CDDcd000184.28E-3258116No hitNo description
PRINTSPR003671.5E-108096IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAVRHTRDTE TSQKDSTSTS SSELTHSSPN SPITRNECLR VINNNTKRKR ENNQRPVYRG  60
VRMRAWGKWV SEIREPRKRS RIWLGTFETP EMAARAHDVA ALCIKGNSAI LNFPELTELL  120
PRPASSSPRD VQAAAALAAA MEYHAPEVSS SSSSEVNGPE EELSQIVELP SLEDEGSDSA  180
ELKAELVTID SVEKWLNLPD WTEQIGFNGC VYESTADILL ADWITDYKFC L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-18581151573Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021749818.17e-83ethylene-responsive transcription factor TINY-like
SwissprotQ9LYD33e-52DREB3_ARATH; Dehydration-responsive element-binding protein 3
SwissprotQ9M0802e-52ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLA0A0K9R2Z15e-79A0A0K9R2Z1_SPIOL; Uncharacterized protein
STRINGXP_010691437.11e-70(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.18e-51ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]