PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_015132-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 359aa    MW: 40405.6 Da    PI: 9.1037
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_015132-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix46.31.1e-1411118285
         trihelix   2 WtkqevlaLiearremeerlrrgk.......................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr. 71 
                      Wt +e++ Liea+++++er + ++                         + +W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ +k+  
  AHYPO_015132-RA  11 WTVEETMILIEAKKKDDERRKLSRsksgvftptvtscssssssgskpITELRWKWVEEYCWGKGCFRSQNQCNDKWDNLMRDYKKVRDYQKNYq 104
                      **************999998854444788889999999999999888889***************************************99983 PP

         trihelix  72 tsessstcpyfdql 85 
                      +++++   + + ++
  AHYPO_015132-RA 105 QNNNKDVLKSYWDM 118
                      34444445566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.027390IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-5629IPR009057Homeodomain-like
PfamPF138377.7E-1110121No hitNo description
Gene3DG3DSA:1.10.10.601.1E-56292IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MAMRDYRKGN WTVEETMILI EAKKKDDERR KLSRSKSGVF TPTVTSCSSS SSSGSKPITE  60
LRWKWVEEYC WGKGCFRSQN QCNDKWDNLM RDYKKVRDYQ KNYQQNNNKD VLKSYWDMDK  120
IQRKDKGLPT NMIPQIYQAL SDVVERSTAS STLVSTAPQF FLPPSSTVVE MLQTPPPLLP  180
STAAMRLSSP RLPPGLPLLP PVFQSASEPP PPLPSATLFE SETSEHSQQV SPLAKKRRRE  240
EGGAREVPSG SETPSAPPPP PPPPPSLLSH TAVSSLEEVS SAISRSATLI SETIQANEER  300
EERRHREMMN LQESRLRIEE SRLEINRQSL NNLTDAINRL ASSIFNWANS QQTQHAPP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767836.11e-110flocculation protein FLO11-like
TrEMBLA0A0J8BV191e-105A0A0J8BV19_BETVU; Uncharacterized protein
TrEMBLA0A0K9RG591e-105A0A0K9RG59_SPIOL; Uncharacterized protein
STRINGXP_010687202.11e-106(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.13e-49Trihelix family protein