PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_014867-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | WOX | ||||||||
Protein Properties | Length: 128aa MW: 14909.9 Da PI: 10.6365 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 47.7 | 2.6e-15 | 2 | 50 | 15 | 57 |
HHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 15 LeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 Le+++ + r+psae++++++++l +++ ++V++WFqN++a++++ AHYPO_014867-RA 2 LEKMYSNegVRTPSAEQIQQITTRLrvygHIEGKNVFYWFQNHKARQRQ 50 9999997679*************************************97 PP | |||||||
2 | Wus_type_Homeobox | 87.5 | 1.4e-28 | 1 | 52 | 15 | 65 |
Wus_type_Homeobox 15 iLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +Le++y+ +G+rtP++e+iq+it++L+ yG+ie+kNVfyWFQN+kaR+rqkq AHYPO_014867-RA 1 MLEKMYSnEGVRTPSAEQIQQITTRLRVYGHIEGKNVFYWFQNHKARQRQKQ 52 69****879*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.49E-8 | 1 | 54 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 10.382 | 1 | 51 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-5 | 1 | 50 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.0E-13 | 2 | 50 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MLEKMYSNEG VRTPSAEQIQ QITTRLRVYG HIEGKNVFYW FQNHKARQRQ KQRHERLLAA 60 VAINNPNHHF SHHHYFPNNI NRPPLFPTSH LPAAFNNHHY LPNPNGKSHF SIFSIMLHFV 120 SCTSSLS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021716607.1 | 4e-40 | WUSCHEL-related homeobox 2-like | ||||
STRING | XP_010686171.1 | 2e-32 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 9e-29 | WUSCHEL related homeobox 2 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_014867-RA |