PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014736-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family ERF
Protein Properties Length: 254aa    MW: 28566.2 Da    PI: 7.3686
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014736-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.6e-17145195356
              AP2   3 ykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                      y GVr+++ +gr++AeIrdp   + k  r +lg++ ta eAa+a+++a+ +++g+
  AHYPO_014736-RA 145 YIGVRRRP-WGRFAAEIRDP---KrKGYRLWLGTYTTAIEAARAYDRAAFEIRGH 195
                      88******.**********8...3334**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-29144203IPR001471AP2/ERF domain
PROSITE profilePS5103222.813144202IPR001471AP2/ERF domain
CDDcd000183.51E-28144203No hitNo description
SMARTSM003806.9E-31144208IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-21145204IPR016177DNA-binding domain
PRINTSPR003672.6E-11145156IPR001471AP2/ERF domain
PfamPF008478.3E-12145195IPR001471AP2/ERF domain
PRINTSPR003672.6E-11184204IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDNSLALNTA IALQLIEEHL FDDQIQSPTS KLTTVSATSS SSSSSSPSSS SSLSLSSSSC  60
SQQIFQTYSK VTTFNICFSN QGQGQGQGQG KGQIQSRSWC QSNTDSFLQC MQSSFEEVID  120
YDETCQSQKV NTRIESTKNY YRGNYIGVRR RPWGRFAAEI RDPKRKGYRL WLGTYTTAIE  180
AARAYDRAAF EIRGHKARLN FPHEIGHRST TTTKRTNQEQ ECISAKRQRI DGDYKDNTQS  240
FSSFDDNDDD DFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-241432041374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021734838.13e-61ethylene-responsive transcription factor 5-like
TrEMBLA0A0K9RFZ35e-51A0A0K9RFZ3_SPIOL; Uncharacterized protein
STRINGXP_010674000.12e-47(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-21ethylene-responsive element binding factor 13