PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_014723-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | FAR1 | ||||||||
Protein Properties | Length: 176aa MW: 20650.8 Da PI: 8.9115 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 32.2 | 3.4e-10 | 23 | 84 | 22 | 90 |
FAR1 22 skrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +r+g++++++f C ++gk++++ + +k+rr+++++++gC a+l ++w+vt l+++HnH++ AHYPO_014723-RA 23 DTRHGRTIRQEFLCHCYGKPRPKVIDMSKNRRNKSSSKCGCSARL-------QEWHVTVLVKQHNHPML 84 5678999*******************9****************98.......48************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.0E-8 | 23 | 84 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MIDFDLNELV IEEDEDAPFD RTDTRHGRTI RQEFLCHCYG KPRPKVIDMS KNRRNKSSSK 60 CGCSARLQEW HVTVLVKQHN HPMLSHEELR FLPSNRSITP QDEKKILLYK EAGLSIRQII 120 RVMELEKNLK HSELPFLERD IRNLYGKVKK LIGVEDANNL KEYLKSAKEE NKMHL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021756202.1 | 2e-66 | subtilisin-like protease SBT5.4 | ||||
TrEMBL | A0A2U1Q8L5 | 7e-44 | A0A2U1Q8L5_ARTAN; Protein FAR1-RELATED SEQUENCE 11 | ||||
STRING | XP_010689388.1 | 2e-47 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10240.1 | 2e-25 | FAR1-related sequence 11 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_014723-RA |