PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014623-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 624aa    MW: 66128.4 Da    PI: 9.5923
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014623-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-0599121123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ C+k F r  nL+ H r H
  AHYPO_014623-RA  99 FICEVCNKGFQREQNLQLHRRGH 121
                      89*******************88 PP
2zf-C2H213.70.00018176198123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC++C+k++  +s+ k H +t+
  AHYPO_014623-RA 176 FKCEKCSKRYAVQSDWKAHSKTC 198
                      89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.0E-698121IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.13E-898121No hitNo description
PROSITE profilePS5015710.9999121IPR007087Zinc finger, C2H2
SMARTSM003550.005299121IPR015880Zinc finger, C2H2-like
PfamPF121713.1E-599121IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
SMARTSM00355160141171IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-5164197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.13E-8171196No hitNo description
SMARTSM0035588176196IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MAASSSSSPF YGGKEGGDAM KINYNPYSHQ QPPQPPLQPP QQQQHSSAVP PPPPPLSSSA  60
PPSNPQNKKK RSLPGTPSKY PDAEVIALSP KTLMATNRFI CEVCNKGFQR EQNLQLHRRG  120
HNLPWKLKQK TNKDQVKKKV YLCPETTCVH HDPARALGDL TGIKKHYSRK HGEKKFKCEK  180
CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAQE TARHPTNIST  240
LGSHLFGPSS AIGGVTTTNN NMGLGVGLSH QLPHHLPPSF SDQMTSDILR LGGGGRGVGS  300
SQFDHLLGGS PFRQQSNMHQ QNPGSFYLSD QSGGPNHFGN NNGSNTNTND QDSQSQNASG  360
GIFSNKLFPG QLPDLGFFSN NTNNSDQNTN TITTSSSTGG GLFSPTGSNS LFGGPQGGSL  420
SSLYTTGPTL QGSSPHMSAT ALLQKAAQMG STTSNNNASA SALLKGLEAK PSAPPQSGPA  480
PPPTSIGGGG YGGLFGENEQ NNLHELLIRD NIMNTSFFGG DHHQTGGSGD HHNSNYGGFN  540
PNKTGLGVGS SDRLTRDFLG VGEIVRSMSG GGFTANSQSM NNSAANNNNN NNNNNNNSAN  600
TNTNVNNSVP SSTQAYGGNG NNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33172233364Zinc finger protein JACKDAW
5b3h_F2e-33172233364Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010680044.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic
TrEMBLA0A0K9RP190.0A0A0K9RP19_SPIOL; Uncharacterized protein
STRINGXP_010680044.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.17e-99indeterminate(ID)-domain 5