PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014525-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NF-YA
Protein Properties Length: 295aa    MW: 32289.8 Da    PI: 8.6425
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014525-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.68.6e-33141197158
        CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                      +ep+YVNaKQy++Il+RRq+Rak+e+++kl +k rkpylheSRh hAl+R RgsgGrF
  AHYPO_014525-RA 141 NEPIYVNAKQYHGILRRRQSRAKMEAQNKL-IKVRKPYLHESRHLHALNRVRGSGGRF 197
                      59****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.7E-36139200IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.797140200IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.4E-27142197IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.6E-24143165IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.6E-24174197IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MSHLYVNCPA NWSSNDQPIS DSFSKSLTLK VNSPPQLHLH ARSLGFHLQD QDSSSSQSTQ  60
SNHDVPANAG TNSQDQCMSS ESGQEVSCGK NIGQVTPVYL MGHPEAAFST GQLDYNHTMI  120
QSHMMGITNA RVPLPLDIAE NEPIYVNAKQ YHGILRRRQS RAKMEAQNKL IKVRKPYLHE  180
SRHLHALNRV RGSGGRFLSQ KKQERLDSAS TKANHSFSSS DAFGHHGNNN MVFEPHQSQC  240
MASSTLNISN GGTAFFQEQD IGFLGISSSH TGGAIQHNGG FMNTPKQHQA SVVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20142204365NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021715040.11e-155nuclear transcription factor Y subunit A-7-like
RefseqXP_021715041.11e-155nuclear transcription factor Y subunit A-7-like
TrEMBLA0A0K9RF321e-135A0A0K9RF32_SPIOL; Uncharacterized protein
STRINGXP_010666451.11e-141(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54160.12e-39nuclear factor Y, subunit A5