PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014510-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 465aa    MW: 53284.7 Da    PI: 6.7949
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014510-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.29.4e-161982751698
                      EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
               B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                      +++pk+ +    ++  ++ t+ l+d++g+sW ++l+  +++gr+ l+kGW+eFv++ +L +gD+++F++ ++      v+++r
  AHYPO_014510-RA 198 VTIPKPMLVGKTYS--NKETVLLKDTEGNSWPMELR-VRQDGRVDLAKGWREFVNDSDLMTGDVLIFEFLSN--NMIQVQIVR 275
                      46677766444333..4559***************5.566678*************************7654..333566666 PP
2B340.64.5e-133434231296
                      HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      ++  l +pk  a + +++   + t++l d++gr+W+++++ r ++gr+ l+ G ++F ka ++++gD+++F+++   e+  +v++
  AHYPO_014510-RA 343 RNTYLNIPKAIAIKQKLVD--KDTVVLCDPEGRKWSIEVRTRPSDGRIGLGHGLSDFLKAYEIDVGDTLIFEFVT--ERMIKVHI 423
                      566789******9999884..449************************************************765..44445665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.58811106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.0E-1411107IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-1513110IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-913103No hitNo description
SMARTSM010190.002814106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-18179277IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-18180277IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.226183277IPR003340B3 DNA binding domain
SMARTSM010196.0E-6184277IPR003340B3 DNA binding domain
PfamPF023626.4E-13198275IPR003340B3 DNA binding domain
CDDcd100171.27E-11214275No hitNo description
PROSITE profilePS5086310.828332427IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-15334424IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.4E-6334427IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.5E-15340426IPR015300DNA-binding pseudobarrel domain
PfamPF023622.2E-10343425IPR003340B3 DNA binding domain
CDDcd100176.35E-13347425No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MENKRKLSFR RASFVKVLDD NFTEKLEMPP SFVNIFEGDI PPWLILEISG SRKCWRVDVE  60
DDENGRVYLS YGFNYFIKAH SLEAGNFLLF EYEKPSILQV KIYEKDGSER ANESTLELEY  120
EIRASESPKQ TPKIHEGKPS ESPRQTSIIH VAIRYGECEI QRNGINNTKR KKCMMTATGQ  180
NSCFSLTWRK ASHFLYYVTI PKPMLVGKTY SNKETVLLKD TEGNSWPMEL RVRQDGRVDL  240
AKGWREFVND SDLMTGDVLI FEFLSNNMIQ VQIVRANQAG NPSEREQDRK IEPKQLFDTR  300
YENVEPTTNR TMPNNTPVTV GNARVASEIK SSSFSVTWSL LSRNTYLNIP KAIAIKQKLV  360
DKDTVVLCDP EGRKWSIEVR TRPSDGRIGL GHGLSDFLKA YEIDVGDTLI FEFVTERMIK  420
VHIIKACGLN HFVSGASVKQ ELMNLDLPME VGPWLIHDAP EDLNH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010666268.20.0PREDICTED: putative B3 domain-containing protein Os03g0621600
TrEMBLA0A0J8B5C20.0A0A0J8B5C2_BETVU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-14B3 family protein