PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014305-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family TALE
Protein Properties Length: 553aa    MW: 62206.4 Da    PI: 6.5049
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014305-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox253.3e-084715081954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      F +  ++yp+ +e+  LA k gLt +qV++WF N R +
  AHYPO_014305-RA 471 FDNflHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVR 508
                      5555589*****************************88 PP
2BELL74.81.3e-24349413772
             BELL   7 kkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      +kk+++l ll++Vd+rY+++ +++++vis+F+a+++l++ +++  +Al++iS+ +++L+++i++qi
  AHYPO_014305-RA 349 SKKSQMLALLQMVDDRYNRCLDEIHMVISAFHAATELDP-QLHSYFALQTISFFYKNLRERISNQI 413
                      7**************************************.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-22270411IPR006563POX domain
PfamPF075265.0E-23275410IPR006563POX domain
PROSITE profilePS5007111.046449512IPR001356Homeobox domain
SMARTSM003897.2E-5452516IPR001356Homeobox domain
CDDcd000864.38E-10452512No hitNo description
SuperFamilySSF466898.98E-15454520IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-24455517IPR009057Homeodomain-like
PfamPF059201.6E-14469508IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009640Biological Processphotomorphogenesis
GO:0010073Biological Processmeristem maintenance
GO:0010227Biological Processfloral organ abscission
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0010371Biological Processregulation of gibberellin biosynthetic process
GO:0090470Biological Processshoot organ boundary specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MESDSYMHLD HPNGIPMIIN GIPSQSLSES NLRTNFFEQI TQNDSMLGLP LLTSLQGQCY  60
KAIHSDKAVC YDGLIDRSNS IFQDLCLGGS PFAPTSLPMV LPPRTGLNND ANNSIMSLQQ  120
EVPPESLREM FTSGISYASS SSIPTINCSY DGSVGDLNDK WDHNGILMQQ EMNWRASTSG  180
LEPIPFNCSE NANNEWLLPS SNSVCTSHPL GFSRCHNELS LSLATSRSSL PSDLSSSVFH  240
SSSQTRLSSE RSSHRSNELP HGCTSNSRSA EVSPVISGSR YHSVLQQILS EIASFSLDSL  300
DRTSYKNCMS SSSNHPFSAN HLFDPGSLLN NPNEFDDNDR SFEIPSGSSK KSQMLALLQM  360
VDDRYNRCLD EIHMVISAFH AATELDPQLH SYFALQTISF FYKNLRERIS NQILAMGMDS  420
GSPRFSNGRS FDKSFIQKQW TIQQMKRKDQ MWRPQRGLPE RSVSVLRAWM FDNFLHPYPK  480
DAEKHLLAIK SGLTRSQVSN WFINARVRLW KPLVEEMCSE LNRKKGSRQH DEESNNNNDS  540
RSQLCVYDYN QR*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739029.10.0homeobox protein ATH1-like
RefseqXP_021739030.10.0homeobox protein ATH1-like
SwissprotP487311e-92ATH1_ARATH; Homeobox protein ATH1
TrEMBLA0A0J8B6N50.0A0A0J8B6N5_BETVU; Uncharacterized protein
STRINGXP_010667130.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32980.14e-89homeobox gene 1
Publications ? help Back to Top
  1. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]