PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_014151-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 546aa    MW: 61006 Da    PI: 4.3615
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_014151-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.23.9e-54111381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      l+pGfrFhPtdeelv++yLk+kv+g+++++ ++i+e+diykveP+dLp  +k+k++++ewyfFs  d+ky +g+r+nrat++gyWk+tgkd++v
  AHYPO_014151-RA  11 LAPGFRFHPTDEELVWYYLKRKVSGRPFRV-DAISEIDIYKVEPSDLPglSKLKTRDQEWYFFSALDRKYGNGSRTNRATNEGYWKTTGKDRPV 103
                      579***************************.99***************655999999************************************* PP

              NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++ ++++vg+kktLv++kgrap+ge+++Wvmhey+l
  AHYPO_014151-RA 104 YH-RSQVVGMKKTLVYHKGRAPRGERSNWVMHEYKL 138
                      **.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-618161IPR003441NAC domain
PROSITE profilePS5100557.26211161IPR003441NAC domain
PfamPF023652.7E-2713138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MVQNFSKSTS LAPGFRFHPT DEELVWYYLK RKVSGRPFRV DAISEIDIYK VEPSDLPGLS  60
KLKTRDQEWY FFSALDRKYG NGSRTNRATN EGYWKTTGKD RPVYHRSQVV GMKKTLVYHK  120
GRAPRGERSN WVMHEYKLND DVLGDAGFSP DGFVLCRVFQ KSGTGPKNGE QYGAPLVEEE  180
WEDSGEAVVP SEVSFEDPYV DDDAYIEQND LNQVSLLPEN VPLPVSFDNA DINNCLQGSQ  240
DMPTNNLQSV EEFEDKYSLE ALDDQKFYVD VHDVHDGSNA FVVKNEHMVQ PNDSSNEDPV  300
NLHTLDELLF DATNADSDNG LYFDANLPDF DFFESNFDDP DFDIAPYLND SLFGVMDDKA  360
DEVFFTKQDM IGETLEMSTI QKPPVIGDDG STSSSCQVMD VSKFKPSKKD MQTPCLSQAN  420
CFLKDIPAPS AFASELPSKD VTARLNAAVH SSSSIHLPVG MIRIWDMPSG VNGSGVQLSF  480
DKTGSLNVLL SFEFPHSIDP LGVESLTGML SKMSTAASRR WLCFTFFLVF LFGLSSKIGT  540
CIYAK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-461016719174NAC domain-containing protein 19
3swm_B1e-461016719174NAC domain-containing protein 19
3swm_C1e-461016719174NAC domain-containing protein 19
3swm_D1e-461016719174NAC domain-containing protein 19
3swp_A1e-461016719174NAC domain-containing protein 19
3swp_B1e-461016719174NAC domain-containing protein 19
3swp_C1e-461016719174NAC domain-containing protein 19
3swp_D1e-461016719174NAC domain-containing protein 19
3ulx_A1e-461016114168Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010694513.10.0PREDICTED: NAC domain-containing protein 78
TrEMBLA0A0K9RU350.0A0A0K9RU35_SPIOL; Uncharacterized protein
STRINGXP_010694513.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.11e-118NAC domain containing protein 2