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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | AHYPO_013833-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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| Family | B3 | ||||||||
| Protein Properties | Length: 67aa MW: 7330.59 Da PI: 9.9983 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 33.7 | 6.6e-11 | 1 | 38 | 61 | 98 |
E-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 61 ltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
+++GW +F+k+n+L++gD++v++l+++ + ++v+++r
AHYPO_013833-RA 1 MSRGWPKFAKDNKLQVGDICVLELMKSCTLLFKVHIIR 38
579**********************9888878888877 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.40.330.10 | 8.9E-10 | 1 | 38 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 6.1E-9 | 1 | 38 | IPR003340 | B3 DNA binding domain |
| SuperFamily | SSF101936 | 1.31E-10 | 1 | 39 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 10.715 | 1 | 40 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.14E-11 | 1 | 38 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 67 aa Download sequence Send to blast |
MSRGWPKFAK DNKLQVGDIC VLELMKSCTL LFKVHIIRVR GDAETDAQGV QNMAQAQVKA 60 KAKAQD* |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G19184.1 | 3e-07 | B3 family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | AHYPO_013833-RA |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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