PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_013530-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | DBB | ||||||||
Protein Properties | Length: 175aa MW: 19529.3 Da PI: 4.6202 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.1 | 1.4e-06 | 4 | 29 | 5 | 30 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedCl 30 C+ +e++e++ fC ++ lCe C AHYPO_013530-RA 4 QCDVCEKQEAIVFCAADEAALCEGCD 29 7************************7 PP | |||||||
2 | zf-B_box | 20.5 | 1e-06 | 32 | 61 | 11 | 38 |
zf-B_box 11 ekelqlfCedCqqllCedClleeHkg..Ht 38 ek++ lfC++++ lC++C +Hk Ht AHYPO_013530-RA 32 EKRAFLFCREDRAILCRECDIPIHKAneHT 61 566889******************877865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.954 | 20 | 69 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.3E-12 | 20 | 69 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.37E-7 | 24 | 57 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0080167 | Biological Process | response to karrikin | ||||
GO:1900458 | Biological Process | negative regulation of brassinosteroid mediated signaling pathway | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MKIQCDVCEK QEAIVFCAAD EAALCEGCDY REKRAFLFCR EDRAILCREC DIPIHKANEH 60 TQNHNRYLLT GVKISASSST YINGSDGSSS SSELNSISNT KTSISSCDHD NNNMFNQSYS 120 NNTIYTNTPS STTMNNHNNH VDEEGISEYL MESLPGWRLE DLLDSSSASH NLYF* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021849954.1 | 3e-73 | B-box zinc finger protein 20-like | ||||
Swissprot | Q0IGM7 | 1e-42 | BBX20_ARATH; B-box zinc finger protein 20 | ||||
TrEMBL | A0A0K9QAT5 | 8e-72 | A0A0K9QAT5_SPIOL; Uncharacterized protein | ||||
STRING | XP_010690797.1 | 2e-62 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75540.1 | 3e-34 | salt tolerance homolog2 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_013530-RA |
Publications ? help Back to Top | |||
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