PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013463-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 363aa    MW: 41897.8 Da    PI: 7.9384
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013463-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-05201220120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      + C++C+k+F+r  n++ H+
  AHYPO_013463-RA 201 FACSICNKTFNRYNNMQMHM 220
                      78*****************9 PP
2zf-C2H212.90.00034285307123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +C+k F  k + ++H +++
  AHYPO_013463-RA 285 FMCRKCSKAFAVKGDWRTHEKNC 307
                      89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-5197224No hitNo description
Gene3DG3DSA:3.30.160.604.2E-6201220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.081201223IPR015880Zinc finger, C2H2-like
PfamPF128742.1E-4201220No hitNo description
PROSITE profilePS5015710.803201228IPR007087Zinc finger, C2H2
PROSITE patternPS000280203223IPR007087Zinc finger, C2H2
SMARTSM00355240248280IPR015880Zinc finger, C2H2-like
SMARTSM0035573285305IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDLCIDQAPN FIEWLKLSPP LDSPSSSSTI IHQKSYDHHN KPKNPMMIMM KLPLFYKQSH  60
QDHDEETTLP LLSRLCEAKA IKEEEGNHGI YKNEKIISDH EVEKFSLHIG LPNNNIISTN  120
YNYEDNLCTN NDDHSMVEGM KCDLKLEKKK EKDDDMMMMM INDDHKEKIR MNDQHYSSSL  180
SIESRFWIPT PAQILIGPMQ FACSICNKTF NRYNNMQMHM WGHGSEYRKG PESLRGTQPA  240
AMLRLPCYCC AQGCKNNINH PRAKPLKDFR TLQTHFKRKH GTKGFMCRKC SKAFAVKGDW  300
RTHEKNCGKL WYCTCGSDFK HKRSLKDHIR SFGKGHSPHP SLEGFEEEKE CITSTTGSSD  360
DD*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021716386.10.0zinc finger protein WIP3-like
SwissprotQ9SGD11e-117ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A0K9RYT41e-144A0A0K9RYT4_SPIOL; Uncharacterized protein
STRINGXP_010686027.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-111WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]