PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013385-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C3H
Protein Properties Length: 353aa    MW: 38919.4 Da    PI: 6.6217
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013385-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.31.2e-07137157526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C+ f++ G Ck Gd+C FaHg
  AHYPO_013385-RA 137 ACSEFRK-GGCKKGDSCEFAHG 157
                      7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.0E-5132158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.634132159IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-5137157IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-5137159IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.113167191IPR000571Zinc finger, CCCH-type
SMARTSM0035612167190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MMIGETHRHH KIHVPPWKES VNPTVQINSP NSSPPSLLSN GASYSPNSPS YYDAVLASLR  60
GYLHPDVGEI ESPMADDFSG DFDFVAGDYD DEFFMYDFKV RKCNRARAHD WTECPFAHPG  120
EKAHRRDPRK YSYSGTACSE FRKGGCKKGD SCEFAHGVFE CWLHPSRFRT QPCKDGSGCT  180
RRVCFFAHTP DQLRSPPGLG SPRGIHGGYF SGSEEGSMSS PSVGELVASF RNLQLNKVKS  240
MPSSWMTHPL HGSPVFGSPQ GVVGPTAMSR AGFFSLPTTP TRPRIGYWDS KEFVDEEDDG  300
PVMERVESGR VLRARMFEKL SKENPLDGPG SPLSVSVTGP DPDFGWVSDL IE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021725009.10.0zinc finger CCCH domain-containing protein 20-like isoform X1
SwissprotQ9M0G22e-92C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A0K9RHJ21e-174A0A0K9RHJ2_SPIOL; Uncharacterized protein
STRINGXP_010688398.11e-170(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-89C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]