PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_013259-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family NAC
Protein Properties Length: 228aa    MW: 26826.3 Da    PI: 6.1334
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_013259-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.24.8e-17587167
              NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................kvka...eekewyfFskrdkk 67
                     +ppGfrFhPt+eelv +yLk+kv++ k++l +vi ++d+y++ePwd++                        ++++ y++++++++
  AHYPO_013259-RA  5 VPPGFRFHPTEEELVGFYLKRKVNSLKFDL-DVIIDIDLYRMEPWDIQGwvvcrafkkpspnhkqG--YeawNHQNNYYYIRNNNT 87
                     69****************************.99**************9557888877777654331..022333445777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.63E-18355IPR003441NAC domain
PROSITE profilePS5100512.6835153IPR003441NAC domain
PfamPF023655.6E-9676IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MESCVPPGFR FHPTEEELVG FYLKRKVNSL KFDLDVIIDI DLYRMEPWDI QGWVVCRAFK  60
KPSPNHKQGY EAWNHQNNYY YIRNNNTIAS PSSDHHHHLN DSLNQRLTNF QHPQQSMHHP  120
TYNNNFDHQE FISSSSNTVD LLENHLITDL PRLDSPSSLY DHHHHHHHHQ NHDHHEIMSS  180
NKWEILDSFL GDSSSQIISE NTTNSHDYEI EVQNQLGSFL EECFPNL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010678128.17e-47PREDICTED: NAC domain-containing protein 30
STRINGXP_010678128.13e-46(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71930.14e-24vascular related NAC-domain protein 7