PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_013086-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

NAC

Protein Properties

Length: 280aa MW: 31630 Da PI: 7.7464

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_013086-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	93	4.9e-29	9	156	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee............vikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknr 76 lppG+rF P++eel+++yL k ++k+l+l+ +ike+++y+++P +Lp +++++++wy +++r ++++ +++++r AHYPO_013086-RA 9 LPPGCRFYPSEEELLHYYLPYKNNNKSLPLQLsssfglnpnfydTIKEINLYNFNPFELPVftcfkfGFRGRKRHWYCYTERVNSSE-ERKSRR 101 79**********************9544224566666666658***********557775544556678888888777653.455566 PP NAM 77 atksgyWkatgkdkevlsk.kgelvglkktLvfy..kgrapkgektdWvmheyrl 128 ++ g+Wk +gk k+v+ + ++ + g +k+++fy k + + +++tdWvm ey+l AHYPO_013086-RA 102 KAGFGFWKMKGKGKDVIGNgGKVVLGRRKSFIFYmeKFHGKAAVRTDWVMYEYAL 156 999**********98455568*****6444778889*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-32	7	172	IPR003441	NAC domain
PROSITE profile	PS51005	35.423	9	172	IPR003441	NAC domain
Pfam	PF02365	3.7E-17	10	156	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MGDPNGTSLP PGCRFYPSEE ELLHYYLPYK NNNKSLPLQL SSSFGLNPNF YDTIKEINLY 60 NFNPFELPVF TCFKFGFRGR KRHWYCYTER VNSSEERKSR RKAGFGFWKM KGKGKDVIGN 120 GGKVVLGRRK SFIFYMEKFH GKAAVRTDWV MYEYALISNL KDSFVVCHVF VKPCGRNSVS 180 EHALCSCGGE SIATVRHIGI QHDGTIISAL AEDKTPRSDC VNDKVLGHPS DLIEETEPNN 240 LVKSPEHVVI SDLLVDSLTV QHLACIREGD YLELDDLVG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-19	8	172	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-19	8	172	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-19	8	172	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-19	8	172	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	6e-19	8	172	19	168	NAC domain-containing protein 19
3swm_B	6e-19	8	172	19	168	NAC domain-containing protein 19
3swm_C	6e-19	8	172	19	168	NAC domain-containing protein 19
3swm_D	6e-19	8	172	19	168	NAC domain-containing protein 19
3swp_A	6e-19	8	172	19	168	NAC domain-containing protein 19
3swp_B	6e-19	8	172	19	168	NAC domain-containing protein 19
3swp_C	6e-19	8	172	19	168	NAC domain-containing protein 19
3swp_D	6e-19	8	172	19	168	NAC domain-containing protein 19
4dul_A	6e-19	8	172	16	165	NAC domain-containing protein 19
4dul_B	6e-19	8	172	16	165	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021838298.1	1e-126	NAC transcription factor 29-like isoform X1
TrEMBL	A0A0K9R5M3	1e-124	A0A0K9R5M3_SPIOL; Uncharacterized protein
STRING	XP_010688772.1	1e-122	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	9e-17	NAC domain containing protein 3

Link Out ? help Back to Top
Phytozome	AHYPO_013086-RA