PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012959-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family WRKY
Protein Properties Length: 340aa    MW: 37041.5 Da    PI: 9.5992
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012959-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.13.7e-18188224237
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEE CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkk 37 
                      +Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkk
  AHYPO_012959-RA 188 KDGYQWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKK 224
                      8***************************99******7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.1E-18176224IPR003657WRKY domain
PROSITE profilePS5081116.834182223IPR003657WRKY domain
SuperFamilySSF1182901.96E-15184224IPR003657WRKY domain
SMARTSM007742.2E-12187236IPR003657WRKY domain
PfamPF031063.9E-14188224IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDYSATWLSS ASLDVKNSNN TLRLFDDAPV REPIKPKLIN AGPVSGPGPA PRASPPMPSN  60
EVASKLRLKD ETVDLMEELK RVNAENKRLT EMLTVVCENY NDLKRQLVDY MSKSCSNEIN  120
NANKKRKVEN SSNNGNNNNG VIVKNNGDTS SSDEEDSYDH KPKEETIKAK ITRVAVRTQA  180
SDSTLILKDG YQWRKYGQKV TRDNPCPRAY FKCSFAPSCP VKKKGGAGTG TGTVPSSSSR  240
SIVSLSSVPS NGSNPTVTLD LTKPKSNITK CNDVHDFSTT NTNKMFNTIN QNQVAKFSSP  300
EFQKLLAEQM ASSLTKDPNF TAALAAAITG RFVQQSSSD*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010691587.11e-125PREDICTED: probable WRKY transcription factor 40 isoform X2
TrEMBLQ76LA91e-109Q76LA9_SPIOL; WRKY transcription factor 1
STRINGXP_010691587.11e-125(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.17e-56WRKY DNA-binding protein 40