PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012721-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 173aa    MW: 19403.8 Da    PI: 8.8055
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012721-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000412244123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C+ C k F ++  L  H++ H
  AHYPO_012721-RA 22 YRCKFCEKKFQNSQALGGHQNAH 44
                     9******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.2E-52048IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.71E-72049No hitNo description
PROSITE profilePS5015711.7182249IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEKNSSKSDN KSKKSPRVSK TYRCKFCEKK FQNSQALGGH QNAHKQERRE ANIRNQESRM  60
MMMAGLTVMP AFAYVNNHGL APHQIIVGQP VLPYMNTSCY ADYWPGSYHL GEGTLDSSAP  120
QSHHQGRITN QDVVDNFVEE QQKSASKNNV DQFTFELPDL NLNPSPPPPP LL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80730.14e-11zinc-finger protein 1