PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012641-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family B3
Protein Properties Length: 570aa    MW: 66337.8 Da    PI: 8.9378
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012641-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.5e-1126111498
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt.kGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      vl  s+++++  l+lpkkf+ +++   + + + +    +  +W+vkl  +k ++ ++l+ + Wk+F ka  L+  D+++Fk++++++f   v +
  AHYPO_012641-RA  26 VL--SNHFRN-GLILPKKFT-DCMRT-HLPDKAV-LKVNTITWNVKL--EKDKDDVMLQgDEWKQFTKAYSLNKLDMLLFKYNRHECF--EVLL 109
                      44..555555.5*******9.66433.4554455.55689*******..9999999998578********************999*99..7777 PP

                      E- CS
               B3  97 fr 98 
                      f+
  AHYPO_012641-RA 110 FD 111
                      66 PP
2B331.53.2e-10262339185
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                      f+ v+ ps+v k+  +++p++   e  +k  +  +++l+  + ++W  +l ++k++g   +++GWk+F+ +n L+e D+++F  +
  AHYPO_012641-RA 262 FIAVMRPSSVYKRFYMTIPNHWKHESFYK-GQ--EVILKV-KDKTWVCTLEFDKYRG---FQRGWKRFALENFLEEFDVCLFVPT 339
                      78899****************96555433.33..455444.66************96...7*********************844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.37E-1120111IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.94120113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.6E-1421112IPR015300DNA-binding pseudobarrel domain
CDDcd100178.93E-922111No hitNo description
SMARTSM010192.5E-923113IPR003340B3 DNA binding domain
PfamPF023623.0E-923111IPR003340B3 DNA binding domain
CDDcd100171.38E-13261354No hitNo description
SuperFamilySSF1019366.67E-11261338IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-11261354IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0022262356IPR003340B3 DNA binding domain
PfamPF023621.0E-7262353IPR003340B3 DNA binding domain
PROSITE profilePS508639.657262356IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-15464564IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-14468563IPR015300DNA-binding pseudobarrel domain
CDDcd100176.75E-15469564No hitNo description
SMARTSM010190.0014470566IPR003340B3 DNA binding domain
PROSITE profilePS5086310.912470566IPR003340B3 DNA binding domain
PfamPF023621.7E-7471559IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MESKKYEAWE EQMYWENFNF CHFVVVLSNH FRNGLILPKK FTDCMRTHLP DKAVLKVNTI  60
TWNVKLEKDK DDVMLQGDEW KQFTKAYSLN KLDMLLFKYN RHECFEVLLF DQANLCEKEA  120
SYFVRKGQQP KTVNCDDSKG KATDNLVKEI TDRNQEGFRG SAYNLRGRRN NKDCYNEEEH  180
DEGSDSQEND TTPKGADCTR FMEVPFNYSK RNYKTAQKTT HKRKKTVVIH CYKSNRRRVT  240
EAEKEKAMEK AKEALALCCD SFIAVMRPSS VYKRFYMTIP NHWKHESFYK GQEVILKVKD  300
KTWVCTLEFD KYRGFQRGWK RFALENFLEE FDVCLFVPTA SINGRAALDV SIFRVVPEPV  360
HLSPVTPCLA EDLDYPQRKR CRKYSGPFSK GLYSGRGANK TDYTPETAVT ARDVPPNSSC  420
KNETELSGRS TSSREIRACG KSSARQITEA QKIQVLNKAK ETQDEHENSF TAIMRPCCVD  480
KRFFMTIPKD WKPRSLMKKG QEVVLKVKEK TWVCIFCLSP SNVGLQTGWK RFALDNELEE  540
FDACVFVPAE WKNGRLVFDV SIFRVRLEV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021736624.11e-176B3 domain-containing protein REM16-like
TrEMBLA0A0K9QAX03e-88A0A0K9QAX0_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-33B3 family protein