PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_012318-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

bZIP

Protein Properties

Length: 284aa MW: 30838.3 Da PI: 6.5861

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_012318-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.3	8.1e-09	106	155	2	51
XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k++kr r + NReA r++R++Kk+ + Le +v +L a N++L k+l+ AHYPO_012318-RA 106 KSRKRGRERGGNREAVRKYRLKKKEHAASLEGEVVKLRAINQQLLKRLQG 155 67899999999**********************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	7.2E-13	101	173	No hit	No description
SMART	SM00338	2.0E-6	102	172	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.554	107	154	IPR004827	Basic-leucine zipper domain
CDD	cd14686	3.05E-11	108	164	No hit	No description
Pfam	PF07716	6.0E-10	108	162	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.25E-6	109	155	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MEDNNPNNSS NSNRVLLPDD GELEFSNQFS SANIGEIPGC GSMDSFFEEL LKDTQTCTHT 60 HTCNPPGPDF SHTHTCFHVH TKILPPPSEE EKSGNNDDSA ESEEMKSRKR GRERGGNREA 120 VRKYRLKKKE HAASLEGEVV KLRAINQQLL KRLQGQAALE AEIARLKCLL VDIRGRIEGE 180 IGSFPYQRPI KSGDMYHNMA GSSFPGSYVM PCNAQCADQL YCLHPGADGK AVDAGVLNGQ 240 GFSGCDYDNC MGGLTSGAKD QFGCGTTNVT TTGASCGNTR RKR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	121	129	RKYRLKKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporters ZIP3, ZIP4, ZIP5 and ZIP9 during growth in zinc-deficient conditions. ZIP9 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010690366.1	1e-161	PREDICTED: basic leucine zipper 19
Swissprot	Q8VY76	7e-84	BZP19_ARATH; Basic leucine zipper 19
TrEMBL	A0A0K9R969	1e-152	A0A0K9R969_SPIOL; Uncharacterized protein
STRING	XP_010690366.1	1e-160	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	2e-80	bZIP family protein

Link Out ? help Back to Top
Phytozome	AHYPO_012318-RA

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Henriques AR,Farias DDR,Costa de Oliveira A Identification and characterization of the bZIP transcription factor involved in zinc homeostasis in cereals. Genet. Mol. Res., 2017. [PMID:28671251] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]