PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012251-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 297aa    MW: 33852.9 Da    PI: 7.3111
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012251-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-054365123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     y+C++C++ F++   L  H+++H
  AHYPO_012251-RA 43 YSCSYCKREFRSAQALGGHMNVH 65
                     99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-64070No hitNo description
PROSITE profilePS5015711.4274370IPR007087Zinc finger, C2H2
SMARTSM003550.00524365IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-74366IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MKRFNQKPFY SSSWEDYQEE EAFVKDAIGG SYGVGPWWPP RLYSCSYCKR EFRSAQALGG  60
HMNVHRRDRA LLKQVIIPIP NHDNDHHDHG HNVMINPCNS MLSQNPSHLH QNHDHDHHVM  120
SNPQNPSHIC NPKASVAHHF DHTHNDDHDN HHVMINPSNS MINYQIPSKN YIPKGANVAH  180
HLALSKLSSN CSISEVKKVI SITNDVFDHT KMSMGLDLAI GTSPKEDDYQ DHGCMKNKRF  240
KQNGDTNVAL IPFYEEIKSS NDIKDFGLEF FNPKACKSRE ELDLELRLGV PSHKVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A9e-123865229superman protein
2l1o_A9e-123865229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-20zinc-finger protein 10