PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012167-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GATA
Protein Properties Length: 354aa    MW: 39934.3 Da    PI: 6.5056
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012167-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.22.3e-18234268135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR+gp g+ktLCnaCG++y++ +l
  AHYPO_012167-RA 234 CLHCATDKTPQWRSGPMGPKTLCNACGVRYKSGRL 268
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.807228264IPR000679Zinc finger, GATA-type
SMARTSM004016.6E-18228278IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-14229265IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577162.85E-15230292No hitNo description
CDDcd002027.46E-15233280No hitNo description
PfamPF003203.2E-16234268IPR000679Zinc finger, GATA-type
PROSITE patternPS003440234259IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDARFGNLQL QCQQQFDHDS IPTFDHFTVE DMLNLPDDMF LNQDVEPNLD HFDDHHNPTD  60
SAELAHLQWI SEIMGEDSCS SENLNKLAGT TMSAMKARPD ERSEIQYYPL KPARDESDCS  120
ETQYYPLKPA RDESDCSETQ YYPLKPARDE SVSPSSILDT ETSTPTKKAA RSKRPRTSSD  180
SWVSVSRPAV LSQGDSEPIQ VTSPTKPVGS KKKGSGGKHR PTIDSTQGGE ARKCLHCATD  240
KTPQWRSGPM GPKTLCNACG VRYKSGRLVP EYRPAASPTF VMAKHSNSHR KVLELQRQKN  300
AMRLQDMQQQ QQQFQHDHFN HHIPNNSMMF NPSINDDYLI NQHFGHDNFG NII*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021739141.15e-79GATA transcription factor 12-like
TrEMBLA0A0K9QTY12e-70A0A0K9QTY1_SPIOL; GATA transcription factor
STRINGXP_010668515.13e-72(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-49GATA transcription factor 12