PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_012129-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family Trihelix
Protein Properties Length: 325aa    MW: 36217.7 Da    PI: 7.3694
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_012129-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix50.26.8e-1635118186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++  v  L+ea+++++   +r+klk+++We+v+k++      ++  ++++qCk+k+e+++kry+ + +++        s++p+f++l+
  AHYPO_012129-RA  35 EWSEGAVSSLLEAYESKWILRNRAKLKGQDWEDVAKHVssraNNTKSPKTQTQCKNKIESMKKRYRSESATADA------SSWPLFSRLD 118
                      5*************************************88777777889999****************999996......47*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-1933120No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEMETNQDYQ NPSSSKPEPS PRKPLLVSDR LKRDEWSEGA VSSLLEAYES KWILRNRAKL  60
KGQDWEDVAK HVSSRANNTK SPKTQTQCKN KIESMKKRYR SESATADASS WPLFSRLDNL  120
LRGTGLSSPM KAIAAASSSP GLVLESSPVA QPLFPPPPLP LPSLQATPTM EIALNSQESN  180
GVEPMVKEDD GEATKVSDQV SDKNQNDQLI ETDSSTPALY SNDKDEPKPK NTMKMKRKKR  240
RREEGNSWED VADSIRWLAE AVVRSEQVRM DTMRELERMR VEAEAKRGEM DLKRTEIIAN  300
TQLEIARLFA SAAGKNVDSS TPIG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235241KRKKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010670500.11e-167PREDICTED: trihelix transcription factor ASIL2
TrEMBLA0A0K9R5821e-160A0A0K9R582_SPIOL; Uncharacterized protein
STRINGXP_010670500.11e-166(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-97sequence-specific DNA binding transcription factors