PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_012062-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

FAR1

Protein Properties

Length: 526aa MW: 61035.9 Da PI: 4.5778

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_012062-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.6	7.6e-22	145	228	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + +r+etrtgC a++++++ ++++w++++++leHnH + AHYPO_012062-RA 145 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTLKEAT-----CRRKETRTGCLAMIRLRLVETNRWRIDEVKLEHNHLF 228 69**************************************99888.....999******************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-19	145	228	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.631	407	443	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.9E-7	408	441	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.5E-7	418	445	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MKENTLNSEA LFEEMEDQED DDSELFEMEA NERESEAHQG FGIDGDDHGN DSEQYFEIDA 60 DINESEQMIE LEGEDHCSDS QQFLEVGHNL ESGTFEVLDL DSNGQETNQE THTMGIDHEN 120 GLSKENCCHP PIVGMEFESY NDAYNYYNCY AKELGFAIRV KSSWTKRNSK EKRGAVLCCN 180 CEGFKTLKEA TCRRKETRTG CLAMIRLRLV ETNRWRIDEV KLEHNHLFDP ERVQNSKSHK 240 KAEVDEFETS WVSMIEQFDL RDHEWLQDWY EDREKWAPVF QKDTFLAGVF TAQAGESFIP 300 FFAGHVHERT SVKEFFDSYD VIIQKKRQKE SLDDLESSGS NLLLRTRCYY ELQLSKFYTK 360 EIFEKFQVEV EMMSACVSIN QVHTSGPVVS YVLKERDSGG MKEFGSFEVM YDKTVNEVRC 420 ACGGFSLNGY LCRHALGVLN HNGVEEIPLP YILQRWRKDC KRSYVPDLGS NTIDISNPTQ 480 WYGHLHKRAM QVVEAGMLSQ DHYMVAWQTF LESLNKVRLT EEKRE*

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MKENTLNSEA LFEEMEDQED DDSELFEMEA NERESEAHQG FGIDGDDHGN DSEQYFEIDA  60
DINESEQMIE LEGEDHCSDS QQFLEVGHNL ESGTFEVLDL DSNGQETNQE THTMGIDHEN  120
GLSKENCCHP PIVGMEFESY NDAYNYYNCY AKELGFAIRV KSSWTKRNSK EKRGAVLCCN  180
CEGFKTLKEA TCRRKETRTG CLAMIRLRLV ETNRWRIDEV KLEHNHLFDP ERVQNSKSHK  240
KAEVDEFETS WVSMIEQFDL RDHEWLQDWY EDREKWAPVF QKDTFLAGVF TAQAGESFIP  300
FFAGHVHERT SVKEFFDSYD VIIQKKRQKE SLDDLESSGS NLLLRTRCYY ELQLSKFYTK  360
EIFEKFQVEV EMMSACVSIN QVHTSGPVVS YVLKERDSGG MKEFGSFEVM YDKTVNEVRC  420
ACGGFSLNGY LCRHALGVLN HNGVEEIPLP YILQRWRKDC KRSYVPDLGS NTIDISNPTQ  480
WYGHLHKRAM QVVEAGMLSQ DHYMVAWQTF LESLNKVRLT EEKRE*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010691106.1	1e-169	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Refseq	XP_019107603.1	1e-169	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Refseq	XP_019107604.1	1e-169	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Refseq	XP_019107605.1	1e-169	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Refseq	XP_019107606.1	1e-169	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Refseq	XP_019107607.1	1e-169	PREDICTED: protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9SSQ4	1e-91	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	A0A103XW92	0.0	A0A103XW92_CYNCS; FAR1 DNA binding domain-containing protein
STRING	XP_010691106.1	1e-168	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	6e-94	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	AHYPO_012062-RA

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]