PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_012020-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 249aa MW: 26394.5 Da PI: 8.3752 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00031 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+k Fs+ L H +H AHYPO_012020-RA 74 YKCAVCDKEFSSYQALGGHKASH 96 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 11.4 | 0.001 | 124 | 143 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+ksF++ L H AHYPO_012020-RA 124 HVCSICNKSFPTGQALGGHK 143 79*********988886665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 1.4E-13 | 73 | 98 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.62E-10 | 73 | 146 | No hit | No description |
PROSITE profile | PS50157 | 9.951 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.036 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.6E-13 | 124 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.411 | 124 | 146 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.038 | 124 | 146 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 126 | 146 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MTLEPLNSST PSLNTLENPI LKKKRSKRPR FDDSSSPSDE EYLALCLIML ARGDSTATTT 60 AKNTTQTTAT AAVYKCAVCD KEFSSYQALG GHKASHRKPA TTTLPDAIAT NTATSYPSTT 120 GKSHVCSICN KSFPTGQALG GHKRCHYEGS LNFNSSKLSS VVANGNSAVM SKINSAAVKS 180 AADDKINSAA ANSATSTVTH SRVMDFDLNM PAVPDNLTVD FDGVIDHVSF DQEVESPHPS 240 KKSRPFTL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 27 | LKKKRSKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021724863.1 | 1e-82 | zinc finger protein ZAT10-like | ||||
TrEMBL | A0A0K9R216 | 3e-73 | A0A0K9R216_SPIOL; Uncharacterized protein | ||||
STRING | XP_010687351.1 | 2e-79 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 1e-40 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_012020-RA |