PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011958-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family MYB_related
Protein Properties Length: 664aa    MW: 73000.9 Da    PI: 9.2751
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011958-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07555604147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  AHYPO_011958-RA 555 RRPFSVSEVEALVRAVEKLGTGRWRDVKLCAFenaKHRTYVDLKDKWKTL 604
                      678999*********************999999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.82E-8376470IPR029071Ubiquitin-related domain
PROSITE profilePS500539.657382455IPR000626Ubiquitin domain
CDDcd017690.00523386452No hitNo description
PROSITE profilePS5129413.884550609IPR017930Myb domain
SMARTSM007171.8E-7554607IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-10555605IPR009057Homeodomain-like
CDDcd116603.95E-16556606No hitNo description
SuperFamilySSF466893.77E-15556636IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MSVSKKTLDH GAKSYHSPTI PRAPRSARST RKRKFPHKIP IGCGLSAFDL LATIAGKLLE  60
ESECSSASSS VAVGFDRCGI DKVVIKNEPR DVDKEGDHDD QGSSEGSVFF SGLQKDVCIG  120
KLETVNELSG ELASPFASSV CSEKVDSDLK LITGKSNESF VNHSSKLDGG SPKCGETDDT  180
NIKNRLLRQL DTNLGESGDT TVANKSTAPT NTEEDVELTL CRGSNPNTSF LKHGNNVKVN  240
CKDTDEIISQ CSHPNNMEKA FRSPTSVRDF KLSTSKYWKT APKLKDYEES DTDGIAKRTQ  300
PSQRTYNEIE KSQRPLKKRI MFHPSSVVTY DGGFSSESVT NSPEKGIIDE KNASAAKLHE  360
EQGTPSSGFC GQKYSNSRNS HVRLNIKSFK IPELFIEVPE STTVGSLKRT VLEAVNAILG  420
NGLRVGVLLH GKKIQDDNRT LLQSGISQSD DINTVGFMLE PNSPTQPSPP YSGISVRSQV  480
NTIVDTQNKP SITDSNRPTE SIKGFVPSLT TERTAKTVFN SKAIVPVPED RIEALAVVPV  540
RHRSKQADIG QRRTRRPFSV SEVEALVRAV EKLGTGRWRD VKLCAFENAK HRTYVDLKDK  600
WKTLVHTARI SPQQRRGEPV PQELLDRVLS AQSYWSEHQA KQHGKQHHHH PQGIIPKLTN  660
SVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-515396431105Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010690776.10.0PREDICTED: telomere repeat-binding protein 3
TrEMBLA0A0K9RZZ30.0A0A0K9RZZ3_SPIOL; Uncharacterized protein
STRINGXP_010690776.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-108TRF-like 2