PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011843-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family GeBP
Protein Properties Length: 403aa    MW: 43878 Da    PI: 4.7984
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011843-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573112.92.1e-35102200297
           DUF573   2 lfqrlwseeDeivlLqGlidfkaktgk...spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                      lfqrlw++eDei lL G+++++a++ +     ++d++afy+++k++++++++k+qlveK+rrLKkK+++  +k++sgke++f+++hdq++fe+s
  AHYPO_011843-RA 102 LFQRLWTDEDEIELLNGFLEYTANRSTtfsGHHHDTTAFYDQIKSKLQLEFNKNQLVEKLRRLKKKYRNVLSKMSSGKEFVFKSPHDQQTFEIS 195
                      79*******************9999987756677************************************************************ PP

           DUF573  93 kkiWg 97 
                      +kiW 
  AHYPO_011843-RA 196 RKIWT 200
                      ****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-33103199IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MASEEDQPIY AFDDDEDDED DSEPLNGAVP DDDVVVDSDS SSGDSAAVTV AIPSSSSISV  60
AVPPPITPSN AVTVALPDPK RQLSCSPIVN PEKKPIDDSR RLFQRLWTDE DEIELLNGFL  120
EYTANRSTTF SGHHHDTTAF YDQIKSKLQL EFNKNQLVEK LRRLKKKYRN VLSKMSSGKE  180
FVFKSPHDQQ TFEISRKIWT NLSPNFRGVA EFDDDDQNPN PNANQLALAC ATPPRPPNSS  240
FVISHINLNS AAAAANSSTP VMVDQKPGSS GIYSINNNSV TPSNVVGFDV MMSNLNIPAG  300
KLSSRKKPRI GKIDDKFMVN NSMNGAVFGG SGGGIKGVGS LSLNAVPLSL SGVNVLGGSF  360
GNVMDDKWRK QQILELEVYS KRLELVQDQI KMSLEELRSQ GN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848793.11e-167probable transcription factor At3g04930 isoform X2
TrEMBLA0A0K9S3861e-137A0A0K9S386_SPIOL; Uncharacterized protein
STRINGXP_010674885.11e-144(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.21e-52DNA-binding storekeeper protein-related transcriptional regulator