PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_011622-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family bHLH
Protein Properties Length: 407aa    MW: 45935.2 Da    PI: 8.4795
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_011622-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-13229275354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h e+Er+RR+r+ s+f  Lr+ +P+       K++Ka+ L  +v+YI++L
  AHYPO_011622-RA 229 VNHVEAERQRRERMHSRFCALRSAVPTV-----SKMDKASLLSDTVDYINEL 275
                      689************************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-3421202IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.36E-17221290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.228226275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.09E-13227280No hitNo description
PfamPF000107.4E-11229275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-16230292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-12232281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGDNMMISSS SSSSLLSPPT LEKKLQNLLQ NQQQWWNYAI FWQTCTNINL DDICSLSLVW  60
GDGYFHGIKN PSISKPNFLI KDQDQDHDHF DGSISSSIDD VISSTEWFFM TSPSKSYPIK  120
QTMNSNETES KIPTTLAKAF TNNALVWLSG AHLLRSCGCE RAKEALSHGL LTLVCIHVPN  180
GVIELGSMDL IMENRALIQQ VHGATNREKV MKKRGRRPGP ARDGQTKMVN HVEAERQRRE  240
RMHSRFCALR SAVPTVSKMD KASLLSDTVD YINELKNKIK SLESQIQTMK MYNNNNNNNN  300
NNNNNNNNNN NNNNNNNIVN NISKIPIEIE VKALGNQATI RVQCENVNYP SARLMDVMKQ  360
LKLQIQHAIV SVVDNMIIQD IVVVNVPLEL QNDVSLRVAI FRRLEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A7e-23162014188Transcription factor MYC3
4rqw_B7e-23162014188Transcription factor MYC3
4rs9_A7e-23162014188Transcription factor MYC3
4yz6_A7e-23162014188Transcription factor MYC3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235240RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767200.11e-140transcription factor MYC2-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.12e-48bHLH family protein