PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AHYPO_011327-RA

Organism

Amaranthus hypochondriacus

Taxonomic ID

28502

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus

Family

TALE

Protein Properties

Length: 519aa MW: 58124.6 Da PI: 6.6651

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AHYPO_011327-RA	genome	BYU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.4	4.3e-07	264	289	29	54
HHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 29 ereeLAkklgLterqVkvWFqNrRak 54 ++ LAk++gLt +qV++WF N R + AHYPO_011327-RA 264 DKIMLAKQTGLTRSQVSNWFINARVR 289 6678********************88 PP
2	BELL	48.5	2.1e-16	169	203	38	72
BELL 38 eavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++aglgsak YtslAlk+iS++FrcLkdai qi AHYPO_011327-RA 169 EQAAGLGSAKTYTSLALKTISKQFRCLKDAIQAQI 203 799******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.8E-23	89	201	IPR006563	POX domain
Pfam	PF07526	8.7E-14	94	169	IPR006563	POX domain
Pfam	PF07526	2.2E-10	169	199	IPR006563	POX domain
SMART	SM00389	5.6E-4	221	297	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.6E-17	258	299	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.669	261	293	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.08E-10	261	300	IPR009057	Homeodomain-like
Pfam	PF05920	1.2E-10	261	289	IPR008422	Homeobox KN domain
CDD	cd00086	8.73E-8	261	294	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 519 aa Download sequence Send to blast
MASYYHHNHN HNHNHNQETN TQIEDQNSNN YHTLILMNQQ FVHIPTSPGP QPNNITLYGY 60 PSHEASDIPR ARQGLSLTLS SQNPALGGTH YGFVLGSKYL KATQELLDEI VHVGNHNNSD 120 ALPKKEIISD EHKDKISFGD AHGATVHLTT ADRQEIQMKK AKLVTMLDEQ AAGLGSAKTY 180 TSLALKTISK QFRCLKDAIQ AQIRAANKSL GDHQESSGGK IEGSRLKYID HQIRQQRALQ 240 QLGMIQNPTA WRPQRGLPER SDSDKIMLAK QTGLTRSQVS NWFINARVRL WKPMIEEMYT 300 EELKEQEQND EISEEKLQES NKEKCNNEAN PAILDQFYNQ DKTHEPKTYK DPNNVTIEGG 360 IPQRSPKRQR NDEVIGYNNG TNNGEMMIKF GNEKQERENE TGYALISGGM NFLGGSDELG 420 TYPIGELGRF DTEDFSPTPR YLHGNGISLS LGLPPCDNLS ITNHTILSQN PNIQFRRTND 480 QFGAMHSPSG HSNAAAFECV DVQNRKGFAA QLLPDFVA*

Sequence ? help Back to Top

Protein Sequence Length: 519 aa Download sequence Send to blast

MASYYHHNHN HNHNHNQETN TQIEDQNSNN YHTLILMNQQ FVHIPTSPGP QPNNITLYGY  60
PSHEASDIPR ARQGLSLTLS SQNPALGGTH YGFVLGSKYL KATQELLDEI VHVGNHNNSD  120
ALPKKEIISD EHKDKISFGD AHGATVHLTT ADRQEIQMKK AKLVTMLDEQ AAGLGSAKTY  180
TSLALKTISK QFRCLKDAIQ AQIRAANKSL GDHQESSGGK IEGSRLKYID HQIRQQRALQ  240
QLGMIQNPTA WRPQRGLPER SDSDKIMLAK QTGLTRSQVS NWFINARVRL WKPMIEEMYT  300
EELKEQEQND EISEEKLQES NKEKCNNEAN PAILDQFYNQ DKTHEPKTYK DPNNVTIEGG  360
IPQRSPKRQR NDEVIGYNNG TNNGEMMIKF GNEKQERENE TGYALISGGM NFLGGSDELG  420
TYPIGELGRF DTEDFSPTPR YLHGNGISLS LGLPPCDNLS ITNHTILSQN PNIQFRRTND  480
QFGAMHSPSG HSNAAAFECV DVQNRKGFAA QLLPDFVA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855424.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	3e-91	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A0K9QEZ8	0.0	A0A0K9QEZ8_SPIOL; Uncharacterized protein
STRING	XP_010676226.1	1e-179	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-93	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	AHYPO_011327-RA

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]