PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_010646-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | NAC | ||||||||
Protein Properties | Length: 214aa MW: 25007.1 Da PI: 6.2229 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 92.1 | 9.3e-29 | 17 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.d.iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat.gkdke 91 lppGfrF+P+deelv ++L+ kv++++ + i+e+ + ++++P++L+ ++ ++ +wyf++k+ +nr+ ++gyWk+ d++ AHYPO_010646-RA 17 LPPGFRFDPSDEELVIDFLHSKVSSSSPNSLCLIPELeGfYHHYHPSQLHGEALESCGQWYFYTKKT--------ENRVNENGYWKELmDMDQP 102 79*************************888788***95423456*****965555667*****9974........489999*****751569** PP NAM 92 vlsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++++ +++lvg kk Lvfy+g +g+kt W+m+e+++ AHYPO_010646-RA 103 IFARnSNKLVGWKKCLVFYRGtFPLTGTKTGWFMQEFHA 141 **9966777***********9445589**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-33 | 9 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.902 | 17 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-20 | 18 | 140 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MMENNSNIKH LVNMKHLPPG FRFDPSDEEL VIDFLHSKVS SSSPNSLCLI PELEGFYHHY 60 HPSQLHGEAL ESCGQWYFYT KKTENRVNEN GYWKELMDMD QPIFARNSNK LVGWKKCLVF 120 YRGTFPLTGT KTGWFMQEFH ACSPNFGAQL HHKRRSKRPD AKKWVVCRVQ QICDESHWMN 180 TSSYEEEVEL SSSDELYYLA MDDDQDDIIS CLH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-20 | 17 | 169 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-20 | 17 | 169 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-20 | 17 | 169 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-20 | 17 | 169 | 17 | 162 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-20 | 17 | 169 | 20 | 165 | NAC domain-containing protein 19 |
3swm_B | 4e-20 | 17 | 169 | 20 | 165 | NAC domain-containing protein 19 |
3swm_C | 4e-20 | 17 | 169 | 20 | 165 | NAC domain-containing protein 19 |
3swm_D | 4e-20 | 17 | 169 | 20 | 165 | NAC domain-containing protein 19 |
3swp_A | 4e-20 | 17 | 169 | 20 | 165 | NAC domain-containing protein 19 |
3swp_B | 4e-20 | 17 | 169 | 20 | 165 | NAC domain-containing protein 19 |
3swp_C | 4e-20 | 17 | 169 | 20 | 165 | NAC domain-containing protein 19 |
3swp_D | 4e-20 | 17 | 169 | 20 | 165 | NAC domain-containing protein 19 |
4dul_A | 4e-20 | 17 | 169 | 17 | 162 | NAC domain-containing protein 19 |
4dul_B | 4e-20 | 17 | 169 | 17 | 162 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010680223.1 | 7e-92 | PREDICTED: NAC domain-containing protein 104-like | ||||
TrEMBL | A0A1B1SHU0 | 8e-82 | A0A1B1SHU0_9CARY; NAC3 | ||||
STRING | XP_010680223.1 | 3e-91 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 3e-35 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_010646-RA |