PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_010601-RA
Organism
Amaranthus hypochondriacus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family C2H2
Protein Properties Length: 1414aa    MW: 158151 Da    PI: 8.357
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_010601-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.0006312971322123
                       EEET..TTTEEESSHHHHHHHHHH.T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                       ++C    C++sF +k +L +H r+ +
  AHYPO_010601-RA 1297 FTCDieGCSMSFGSKQELASHKRNiC 1322
                       899999****************9877 PP
2zf-C2H212.90.0003313221344323
                       ET..TTTEEESSHHHHHHHHHHT CS
          zf-C2H2    3 Cp..dCgksFsrksnLkrHirtH 23  
                       Cp   Cgk F ++ +L++H r+H
  AHYPO_010601-RA 1322 CPvkGCGKKFFSHKYLVQHRRVH 1344
                       9999*****************99 PP
3zf-C2H213.80.0001813801406123
                       EEET..TTTEEESSHHHHHHHHHH..T CS
          zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                       y+C+  dCg++F+  s++ rH r+  H
  AHYPO_010601-RA 1380 YVCTelDCGQTFRFVSDFSRHKRKtgH 1406
                       99********************99666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.7E-162566IPR003349JmjN domain
PROSITE profilePS5118314.2982667IPR003349JmjN domain
PfamPF023754.2E-142760IPR003349JmjN domain
SMARTSM005585.9E-48195364IPR003347JmjC domain
PROSITE profilePS5118432.594198364IPR003347JmjC domain
SuperFamilySSF511973.3E-25209378No hitNo description
PfamPF023731.2E-36228347IPR003347JmjC domain
Gene3DG3DSA:3.30.160.607.6E-412961319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003551112971319IPR015880Zinc finger, C2H2-like
SMARTSM003550.004513201344IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.44513201349IPR007087Zinc finger, C2H2
PROSITE patternPS00028013221344IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-513221348IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.03E-913361376No hitNo description
Gene3DG3DSA:3.30.160.604.3E-813491374IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7213501379IPR007087Zinc finger, C2H2
SMARTSM003550.002313501374IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013521374IPR007087Zinc finger, C2H2
SuperFamilySSF576673.77E-713681402No hitNo description
Gene3DG3DSA:3.30.160.603.2E-813751403IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.98813801411IPR007087Zinc finger, C2H2
SMARTSM003550.4713801406IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028013821406IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0033169Biological Processhistone H3-K9 demethylation
GO:0035067Biological Processnegative regulation of histone acetylation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1414 aa     Download sequence    Send to blast
MGSSSFVAAE HTNPEVFPWL KTLPLAPEYY PTIQEFQDPI SYIYKIEKEA SKYGICKIVP  60
PVPPPSKKSV VSNFNQSLSL SSLNSQNPKS QPTFTTRQQQ IGFCPRKQRP IQKSVWQSGE  120
YYTLQQFEAK AKNFEKNYLK KCSKKALSAL EIETLYWKAN GDRPFSVEYA NDMPGSAFVP  180
LKDKRTGDSV VVAGNVGDTA WNMRGVARAN GSLLRFMKEE IPGVTSPMVY VAMLFSWFAW  240
HVEDHDLHSL NFLHYGASKT WYGVPKDAAA AFEEVIRVYG FGEEINHLVT FATLGEKTTV  300
MSPEVLVNAG VPCCRLVQNA GEFVVTFPRA YHSGFSHGFN CGEASNIATP EWLRFAKDAA  360
IRRASINYPP MVSHFQLLYD LALAICSRVP IGIKAEPRSS RLKDKKKGEG EMLVKQMFVQ  420
DVMQNNELFH TLGKGSEVVL LPHNSSEKFV WSNLRVGSKY KVKPGLPFSL YSSEESIKAS  480
DDIMLARDAN QRNTLYSTKT KSGGSMSTSP HNIQDSENEK GRGAAGDGLL ERGLFSCVKC  540
GIWTFACVAI VQPTELAAQY LMSADCNSLN DWVAASGVSS QGMEAADGEA NTTEPDSFSG  600
SLEKNALDGL YDFSVHSGNY RAHSMDNTSE MKSNTAITKD TSFTENKIES SALGLLALTY  660
GNSSDSDEDD VQPNSPVVSA GNLSGDGSWD NRIHQDDSAS PNFEQGYDSG VERGRSQISS  720
RSECVDEDSP QRFDIYEDCG HRRSNSGDNE YETHNCSAKF AEEDTLTSEQ NYSPIVDDHD  780
AKKMSCASDL VSKPQLSYAR RCDEDSSRMH VFCLEHAVEV EKQLRPIGGV HILLLCHPDY  840
PNVEVEAKKV AEELEMNYVW KDIAFSEATK DDEERIHMAL QSEEATPKNG DWAVKLGINL  900
FYSAILSRSP LYNKQMPYNS VIYSAFGCST PSISSSEAKV RGKGFGRQKK LVMAGKWCGK  960
VWMSNQVHPM LLHRDHDEDD RILSPCLKSN EKVGRKSEAI PKAQTSYMKR KTNKRKKPMS  1020
ESKTVKKMKF EASEFANSEP EDSVDDKPEF ETRRSVRKSK AQGRSIKRVK HHEDIQDSIS  1080
DDSQDDISLH QEPLKSARAS KRGAKRALKG PKGHRSAATL ESFSDGDSPD DISHQHGPRN  1140
SNRKFKAEVK STRKVKPHEA VDSDSEGLRS DESEPEEHER NVRSYASSHR RLSVHEQFEP  1200
VTEDEEVDGG PSTRLRKRIS RPTLKKRENK PAVKKQVPNS KGKKAAHVTM NITPARKGPK  1260
MRLPVSRGPA MKGPARKNPS FSTDANVDKE EDEGDEFTCD IEGCSMSFGS KQELASHKRN  1320
ICPVKGCGKK FFSHKYLVQH RRVHMDDRPL KCPWKGCRMT FKWAWARTEH IRVHTGARPY  1380
VCTELDCGQT FRFVSDFSRH KRKTGHSAKK TRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A4e-75193858353Transcription factor jumonji (Jmj) family protein
6ip4_A4e-75193858353Arabidopsis JMJ13
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00608ChIP-seqTransfer from AT3G48430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010667395.10.0PREDICTED: lysine-specific demethylase REF6 isoform X1
TrEMBLA0A0J8B6950.0A0A0J8B695_BETVU; Uncharacterized protein
STRINGXP_010667395.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.10.0relative of early flowering 6