PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AHYPO_010138-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 546aa MW: 57537.3 Da PI: 8.728 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.6e-05 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H AHYPO_010138-RA 69 FVCEICNKGFQRDQNLQLHRRGH 91 89*******************88 PP | |||||||
2 | zf-C2H2 | 15.4 | 5.5e-05 | 145 | 167 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k Hi+ + AHYPO_010138-RA 145 WKCEKCSKKYAVQSDWKAHIKIC 167 58******************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 68 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.14E-7 | 68 | 91 | No hit | No description |
SMART | SM00355 | 0.017 | 69 | 91 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 69 | 91 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 210 | 110 | 140 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 133 | 166 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 4.14E-7 | 140 | 165 | No hit | No description |
SMART | SM00355 | 77 | 145 | 165 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 546 aa Download sequence Send to blast |
MPADLDVSSP KTMSNSTGQT GDASISSSAD QIEPLKPPPK KKRNQPGMPD PDAEVIALSP 60 KTLMATNRFV CEICNKGFQR DQNLQLHRRG HNLPWKLRQR TSKEIKKRVY VCPEPSCVHH 120 DPSRALGDLT GIKKHFCRKH GEKKWKCEKC SKKYAVQSDW KAHIKICGTR EYKCDCGTIF 180 SRRDSFITHR AFCDALAEES ARNHRPPNPI NGNNNNNNKM ELDSKASIAI ESPPPTTPPP 240 PPPPKKSSPP RTRPLQPPLL TQSTSMVSSI LPIQSSVQAV AENPGPVSDV SIPPVSIAVT 300 GLNDNCNSST ICSSSSGAAA NTSSSVFATI FASTITAPAA PSLPSLPNPG FSDFIQTMAR 360 PECPPPELSL PVSSEPISLC LATNDGSSIF GPAGQERRQY APPPQAAMSA TALLQKAAQI 420 GSANGGSLLR GLGLVSSTSP AAPSESLQWG SRQVEPETRP VLSGLGLGLP CDEGSGMKEL 480 MIGNSSMFGP KQPTLDFLGL GMAAGGSSNN GLTALISSMG SGLDVAAAAA AFGGPEFSSK 540 DMGRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-35 | 141 | 202 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 4e-35 | 141 | 202 | 3 | 64 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00592 | DAP | Transfer from AT5G66730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021757771.1 | 0.0 | LOW QUALITY PROTEIN: protein indeterminate-domain 2-like | ||||
Swissprot | Q9LVQ7 | 1e-169 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A0K9QGD0 | 0.0 | A0A0K9QGD0_SPIOL; Uncharacterized protein | ||||
STRING | XP_010680830.1 | 0.0 | (Beta vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66730.1 | 1e-109 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | AHYPO_010138-RA |
Publications ? help Back to Top | |||
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